RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 RNF181Q9P0P0 153 aa20.04■□□□□ 0.8
MED28-204ENST00000506409 CACNA1SQ13698 1873 aa20.04■□□□□ 0.8
MED28-204ENST00000506409 SLX4Q8IY92 1834 aa20.04■□□□□ 0.8
MED28-204ENST00000506409 RNF123Q5XPI4 1314 aa20.03■□□□□ 0.8
MED28-204ENST00000506409 ARFGEF2Q9Y6D5 1785 aa20.03■□□□□ 0.8
MED28-204ENST00000506409 GOLGA2Q08379 1002 aa20.03■□□□□ 0.8
MED28-204ENST00000506409 PHAXQ9H814 394 aaKnown RBP20.03■□□□□ 0.8
MED28-204ENST00000506409 NFKBIEO00221 500 aa20.02■□□□□ 0.8
MED28-204ENST00000506409 LMNB1P20700 586 aa20.02■□□□□ 0.8
MED28-204ENST00000506409 ALDH1B1P30837 517 aa20.02■□□□□ 0.8
MED28-204ENST00000506409 SOGA3Q5TF21 947 aa20.02■□□□□ 0.8
MED28-204ENST00000506409 RIC3Q7Z5B4 369 aa20.02■□□□□ 0.8
MED28-204ENST00000506409 RPGRQ92834 1020 aaKnown RBP20.02■□□□□ 0.8
MED28-204ENST00000506409 SBF1O95248 1867 aa20.01■□□□□ 0.79
MED28-204ENST00000506409 STK31Q9BXU1 1019 aa20.01■□□□□ 0.79
MED28-204ENST00000506409 TRMT112Q9UI30 125 aaKnown RBP20.01■□□□□ 0.79
MED28-204ENST00000506409 CCER2I3L3R5 266 aa20■□□□□ 0.79
MED28-204ENST00000506409 NLRP3Q96P20 1036 aa20■□□□□ 0.79
MED28-204ENST00000506409 ISCA1Q9BUE6 129 aa20■□□□□ 0.79
MED28-204ENST00000506409 SH3TC1Q8TE82 1336 aa20■□□□□ 0.79
MED28-204ENST00000506409 ATP5J2-PTCD1G3V325 749 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 TCERG1O14776 1098 aaKnown RBP19.99■□□□□ 0.79
MED28-204ENST00000506409 DDX58O95786 925 aaKnown RBP19.99■□□□□ 0.79
MED28-204ENST00000506409 PRELPP51888 382 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 SLC10A5Q5PT55 438 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 C3orf67Q6ZVT6 689 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 C7orf43Q8WVR3 580 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 ZNF428Q96B54 188 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 TAOK3Q9H2K8 898 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 MYH16Q9H6N6 1097 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 SPINK5Q9NQ38 1064 aaPredicted RBP19.99■□□□□ 0.79
MED28-204ENST00000506409 FER1L6Q2WGJ9 1857 aa19.99■□□□□ 0.79
MED28-204ENST00000506409 HOXA10P31260 410 aaPredicted RBP19.98■□□□□ 0.79
MED28-204ENST00000506409 EXOSC9Q06265 439 aaKnown RBP19.98■□□□□ 0.79
MED28-204ENST00000506409 CCDC93Q567U6 631 aa19.98■□□□□ 0.79
MED28-204ENST00000506409 HCLS1P14317 486 aaPredicted RBP19.97■□□□□ 0.79
MED28-204ENST00000506409 SYNE4Q8N205 404 aa19.97■□□□□ 0.79
MED28-204ENST00000506409 RBM17Q96I25 401 aaKnown RBP19.97■□□□□ 0.79
MED28-204ENST00000506409 LTBP3Q9NS15 1303 aa19.97■□□□□ 0.79
MED28-204ENST00000506409 ZC3H4Q9UPT8 1303 aaKnown RBP19.97■□□□□ 0.79
MED28-204ENST00000506409 TRIM28Q13263 835 aaKnown RBP19.96■□□□□ 0.79
MED28-204ENST00000506409 CRAMP1Q96RY5 1269 aa19.96■□□□□ 0.79
MED28-204ENST00000506409 MYD88Q99836 296 aa19.96■□□□□ 0.79
MED28-204ENST00000506409 ZNF521Q96K83 1311 aa19.96■□□□□ 0.79
MED28-204ENST00000506409 SLC4A2P04920 1241 aa19.95■□□□□ 0.78
MED28-204ENST00000506409 OLFM4Q6UX06 510 aa19.95■□□□□ 0.78
MED28-204ENST00000506409 FAM89AQ96GI7 184 aa19.95■□□□□ 0.78
MED28-204ENST00000506409 VAMP4O75379 141 aa19.94■□□□□ 0.78
MED28-204ENST00000506409 RTKN2Q8IZC4 609 aa19.94■□□□□ 0.78
MED28-204ENST00000506409 METTL22Q9BUU2 404 aaPredicted RBP19.94■□□□□ 0.78
MED28-204ENST00000506409 MAP3K2Q9Y2U5 619 aa19.94■□□□□ 0.78
MED28-204ENST00000506409 CCDC88AQ3V6T2 1871 aa19.94■□□□□ 0.78
MED28-204ENST00000506409 PI4KAP2A4QPH2 592 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 C1QTNF8P60827 252 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 RTL5Q5HYW3 569 aaPredicted RBP19.93■□□□□ 0.78
MED28-204ENST00000506409 KSR2Q6VAB6 950 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 G2E3Q7L622 706 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 PI4KAP1Q8N8J0 262 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 KDM2BQ8NHM5 1336 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 TIAM2Q8IVF5 1701 aa19.93■□□□□ 0.78
MED28-204ENST00000506409 PPEF1O14829 653 aaPredicted RBP19.92■□□□□ 0.78
MED28-204ENST00000506409 FKBP4Q02790 459 aaKnown RBP eCLIP19.92■□□□□ 0.78
MED28-204ENST00000506409 DIEXFQ68CQ4 756 aaKnown RBP19.92■□□□□ 0.78
MED28-204ENST00000506409 CC2D2BQ6DHV5 1058 aa19.92■□□□□ 0.78
MED28-204ENST00000506409 CCDC191Q8NCU4 936 aa19.92■□□□□ 0.78
MED28-204ENST00000506409 ABCC4O15439 1325 aa19.92■□□□□ 0.78
MED28-204ENST00000506409 LAMB2P55268 1798 aa19.92■□□□□ 0.78
MED28-204ENST00000506409 KIF3CO14782 793 aa19.91■□□□□ 0.78
MED28-204ENST00000506409 FLIIQ13045 1269 aa19.91■□□□□ 0.78
MED28-204ENST00000506409 ZBTB38Q8NAP3 1195 aaPredicted RBP19.91■□□□□ 0.78
MED28-204ENST00000506409 NMRK2Q9NPI5 230 aa19.91■□□□□ 0.78
MED28-204ENST00000506409 CWC25Q9NXE8 425 aaPredicted RBP19.91■□□□□ 0.78
MED28-204ENST00000506409 DDX60Q8IY21 1712 aaKnown RBP19.9■□□□□ 0.78
MED28-204ENST00000506409 IRS4O14654 1257 aaPredicted RBP19.9■□□□□ 0.78
MED28-204ENST00000506409 NEXNQ0ZGT2 675 aa19.9■□□□□ 0.78
MED28-204ENST00000506409 DDX46Q7L014 1031 aaKnown RBP19.9■□□□□ 0.78
MED28-204ENST00000506409 FKBP5Q13451 457 aaPredicted RBP19.89■□□□□ 0.77
MED28-204ENST00000506409 SNED1Q8TER0 1413 aa19.89■□□□□ 0.77
MED28-204ENST00000506409 TMX4Q9H1E5 349 aaPredicted RBP19.89■□□□□ 0.77
MED28-204ENST00000506409 ZNF277Q9NRM2 450 aaPredicted RBP19.89■□□□□ 0.77
MED28-204ENST00000506409 DICER1Q9UPY3 1922 aaKnown RBP19.89■□□□□ 0.77
MED28-204ENST00000506409 GLTPD2A6NH11 291 aa19.88■□□□□ 0.77
MED28-204ENST00000506409 E9PSI1 815 aa19.88■□□□□ 0.77
MED28-204ENST00000506409 HSP90B1P14625 803 aaKnown RBP19.88■□□□□ 0.77
MED28-204ENST00000506409 GRIPAP1Q4V328 841 aa19.88■□□□□ 0.77
MED28-204ENST00000506409 PSMD1Q99460 953 aa19.88■□□□□ 0.77
MED28-204ENST00000506409 CACNA1FO60840 1977 aa19.88■□□□□ 0.77
MED28-204ENST00000506409 BBOX1O75936 387 aa19.87■□□□□ 0.77
MED28-204ENST00000506409 PCCAP05165 728 aaPredicted RBP19.87■□□□□ 0.77
MED28-204ENST00000506409 IGKV5-2P06315 115 aa19.87■□□□□ 0.77
MED28-204ENST00000506409 GRAPQ13588 217 aa19.87■□□□□ 0.77
MED28-204ENST00000506409 SF3B3Q15393 1217 aaKnown RBP19.87■□□□□ 0.77
MED28-204ENST00000506409 GRAPLQ8TC17 118 aaPredicted RBP19.87■□□□□ 0.77
MED28-204ENST00000506409 ATP6V0A2Q9Y487 856 aa19.87■□□□□ 0.77
MED28-204ENST00000506409 DPY19L2Q6NUT2 758 aa19.86■□□□□ 0.77
MED28-204ENST00000506409 SLC51AQ86UW1 340 aa19.86■□□□□ 0.77
MED28-204ENST00000506409 IARSP41252 1262 aaKnown RBP19.85■□□□□ 0.77
MED28-204ENST00000506409 CWF19L2Q2TBE0 894 aaKnown RBP19.85■□□□□ 0.77
MED28-204ENST00000506409 MIER1Q8N108 512 aa19.85■□□□□ 0.77
MED28-204ENST00000506409 JARID2Q92833 1246 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms