RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ABCB7O75027 752 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 MS4A1P11836 297 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CWF19L2Q2TBE0 894 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 RTL5Q5HYW3 569 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 SUSD4Q5VX71 490 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CNBD1Q8NA66 436 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CCDC191Q8NCU4 936 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 LINS1Q8NG48 757 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CWC25Q9NXE8 425 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CACNA1FO60840 1977 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 CASZ1Q86V15 1759 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 UBN2Q6ZU65 1347 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 TRIM27P14373 513 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 CCT4P50991 539 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 DDR1Q08345 913 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 BEND3Q5T5X7 828 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 NLRP10Q86W26 655 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 NUTM1Q86Y26 1132 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 DZIP1LQ8IYY4 767 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 CCDC24Q8N4L8 307 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 ISCA1Q9BUE6 129 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 C9orf78Q9NZ63 289 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 ATP10DQ9P241 1426 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 SCN7AQ01118 1682 aa10.38□□□□□ -0.75
LIMCH1-206ENST00000505705 BCORQ6W2J9 1755 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 NEURL1BA8MQ27 555 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 ALDH1L1O75891 902 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 IGKV5-2P06315 115 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 PTGER2P43116 358 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 TRIM28Q13263 835 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 FAM89AQ96GI7 184 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 FOXD4L1Q9NU39 408 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 NUP98P52948 1817 aa10.37□□□□□ -0.75
LIMCH1-206ENST00000505705 SH3TC1Q8TE82 1336 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 HSP90B1P14625 803 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 GCKRQ14397 625 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 ERFEQ4G0M1 354 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 PRR5LQ6MZQ0 368 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 ITPRIPQ8IWB1 547 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 ZBTB38Q8NAP3 1195 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 JARID2Q92833 1246 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 TNNQ9UQP3 1299 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 SUPT16HQ9Y5B9 1047 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 ARFGEF2Q9Y6D5 1785 aa10.36□□□□□ -0.75
LIMCH1-206ENST00000505705 NTSR2O95665 410 aa10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 PCCAP05165 728 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 PDE6BP35913 854 aa10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 RRP1P56182 461 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 NLRP3Q96P20 1036 aa10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 SGIP1Q9BQI5 828 aa10.35□□□□□ -0.75
LIMCH1-206ENST00000505705 ABCC4O15439 1325 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 RNF123Q5XPI4 1314 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 IRS4O14654 1257 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 HCLS1P14317 486 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 UBE3BQ7Z3V4 1068 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 TMEM57Q8N5G2 664 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 PANK1Q8TE04 598 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 BRIP1Q9BX63 1249 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 HDAC5Q9UQL6 1122 aa10.34□□□□□ -0.75
LIMCH1-206ENST00000505705 H0YIN7 160 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 H7C1W4 665 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 GRM8O00222 908 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 INTS3Q68E01 1043 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 SYNE4Q8N205 404 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 ZNF622Q969S3 477 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 FHDC1Q9C0D6 1143 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 COG6Q9Y2V7 657 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 CD2APQ9Y5K6 639 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 IBTKQ9P2D0 1353 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 PXDNLA1KZ92 1463 aa10.33□□□□□ -0.76
LIMCH1-206ENST00000505705 ANKRD36CQ5JPF3 1778 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 PDE8AO60658 829 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 GNAI3P08754 354 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 UBTFL1P0CB47 393 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 RLBP1P12271 317 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 TGFB2P61812 414 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 PDE3AQ14432 1141 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 C2CD5Q86YS7 1000 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 RPGRQ92834 1020 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 CHMP4BQ9H444 224 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 CHMP3Q9Y3E7 222 aa10.32□□□□□ -0.76
LIMCH1-206ENST00000505705 AFDNP55196 1824 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 A0A0G2JLW4 131 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 NBPF7P0C2Y1 421 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 MVPQ14764 893 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 SLC10A5Q5PT55 438 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 C20orf194Q5TEA3 1177 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 CCDC85AQ96PX6 553 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 USP44Q9H0E7 712 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 DDX19BQ9UMR2 479 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 PDZRN3Q9UPQ7 1066 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 CDHR2Q9BYE9 1310 aa10.31□□□□□ -0.76
LIMCH1-206ENST00000505705 ABCC12Q96J65 1359 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 DPEP1P16444 411 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 CHRNA5P30532 468 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 CCDC152Q4G0S7 254 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 DDX46Q7L014 1031 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 MASTLQ96GX5 879 aa10.3□□□□□ -0.76
LIMCH1-206ENST00000505705 RBM17Q96I25 401 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms