RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 COX20Q5RI15 118 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 SYT9Q86SS6 491 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 CLP1Q92989 425 aaKnown RBP6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 LRRC4BQ9NT99 713 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNH4Q9UQ05 1017 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 HOXB4P17483 251 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 IDH3AP50213 366 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNQ4P56696 695 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 NAA30Q147X3 362 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 FAM26DQ5JW98 314 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 IER5Q5VY09 327 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 MYO19Q96H55 970 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 USP20Q9Y2K6 914 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 TMEM88BA6NKF7 163 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 AMPD1P23109 780 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 ATP2B4P23634 1241 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNMA1Q12791 1236 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 HIF1AQ16665 826 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 BTBD6Q96KE9 485 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 RRAGCQ9HB90 399 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 AVENQ9NQS1 362 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 MICAL2O94851 1124 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 INPP5BP32019 993 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 RASSF7Q02833 373 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 C11orf91Q3C1V1 193 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 CHSY3Q70JA7 882 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 BHMTQ93088 406 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 IFT43Q96FT9 208 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 SCARF2Q96GP6 870 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 MDFIQ99750 246 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 SEPT3Q9UH03 358 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 TNFRSF10BO14763 440 aa6.92□□□□□ -1.3
HMGB1P29-201ENST00000505659 ETFBKMTQ8IXQ9 262 aa6.92□□□□□ -1.3
HMGB1P29-201ENST00000505659 RNF225M0QZC1 329 aaPredicted RBP6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 OPLAHO14841 1288 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 SIN3BO75182 1162 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 PPP1R15AO75807 674 aaPredicted RBP6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 TBC1D8BQ0IIM8 1120 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 C16orf46Q6P387 395 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 TREML1Q86YW5 311 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 GSX2Q9BZM3 304 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3CA0A087WX78 387 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3DA6NLF2 546 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 GDF11O95390 407 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 NFKB1P19838 968 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 DGKGP49619 791 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ARSDP51689 593 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3BQ3SY89 546 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 LINC00114Q6XXX2 140 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 KRT25Q7Z3Z0 450 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 PODNQ7Z5L7 613 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 BEND7Q8N7W2 519 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3Q8NG57 546 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 COL26A1Q96A83 441 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 SUV39H2Q9H5I1 410 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ADH7P40394 386 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 RGL4Q8IZJ4 473 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 TMEM151AQ8N4L1 468 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 TNFRSF25Q93038 417 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 IGFLR1Q9H665 355 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 STARD13Q9Y3M8 1113 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 ADARB2-AS1A8MUL3 147 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 PTCD1O75127 700 aaKnown RBP6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 COL8A1P27658 744 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 CCINQ13939 588 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 C8orf86Q6ZUL3 223 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 KCTD17Q8N5Z5 321 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZFATQ9P243 1243 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 MKL2Q9ULH7 1088 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 RTCBQ9Y3I0 505 aaKnown RBP6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 PHF20L1A8MW92 1017 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZBTB39O15060 712 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 ALBP02768 609 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 EPB42P16452 691 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 TARSP26639 723 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 NEUROD1Q13562 356 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 KANK3Q6NY19 840 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 CMTR1Q8N1G2 835 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 PNMA5Q96PV4 448 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 UBE2OQ9C0C9 1292 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 SASH3O75995 380 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 SSFA2P28290 1259 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 TRIP4Q15650 581 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 PHLDB3Q6NSJ2 640 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 ERICH6Q7L0X2 663 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 DCAF5Q96JK2 942 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 DNAJB12Q9NXW2 375 aaKnown RBP6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 NAGPAQ9UK23 515 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 KCNMB2Q9Y691 235 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 M0R082 166 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ALAS2P22557 587 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 BRD2P25440 801 aaKnown RBP6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 MTMR3Q13615 1198 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZNF417Q8TAU3 575 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 TRIM11Q96F44 468 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZNF587Q96SQ5 575 aaPredicted RBP6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 STIM2Q9P246 746 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 SLC6A14Q9UN76 642 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms