RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 COX20Q5RI15 118 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 SYT9Q86SS6 491 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 CLP1Q92989 425 aaKnown RBP6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 LRRC4BQ9NT99 713 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNH4Q9UQ05 1017 aa6.96□□□□□ -1.3
HMGB1P29-201ENST00000505659 HOXB4P17483 251 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 IDH3AP50213 366 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNQ4P56696 695 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 NAA30Q147X3 362 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 FAM26DQ5JW98 314 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 IER5Q5VY09 327 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 MYO19Q96H55 970 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 USP20Q9Y2K6 914 aa6.95□□□□□ -1.3
HMGB1P29-201ENST00000505659 TMEM88BA6NKF7 163 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 AMPD1P23109 780 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 ATP2B4P23634 1241 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 KCNMA1Q12791 1236 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 HIF1AQ16665 826 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 BTBD6Q96KE9 485 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 RRAGCQ9HB90 399 aa6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 AVENQ9NQS1 362 aaPredicted RBP6.94□□□□□ -1.3
HMGB1P29-201ENST00000505659 MICAL2O94851 1124 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 INPP5BP32019 993 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 RASSF7Q02833 373 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 C11orf91Q3C1V1 193 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 CHSY3Q70JA7 882 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 BHMTQ93088 406 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 IFT43Q96FT9 208 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 SCARF2Q96GP6 870 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 MDFIQ99750 246 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 SEPT3Q9UH03 358 aa6.93□□□□□ -1.3
HMGB1P29-201ENST00000505659 TNFRSF10BO14763 440 aa6.92□□□□□ -1.3
HMGB1P29-201ENST00000505659 ETFBKMTQ8IXQ9 262 aa6.92□□□□□ -1.3
HMGB1P29-201ENST00000505659 RNF225M0QZC1 329 aaPredicted RBP6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 OPLAHO14841 1288 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 SIN3BO75182 1162 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 PPP1R15AO75807 674 aaPredicted RBP6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 TBC1D8BQ0IIM8 1120 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 C16orf46Q6P387 395 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 TREML1Q86YW5 311 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 GSX2Q9BZM3 304 aa6.91□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3CA0A087WX78 387 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3DA6NLF2 546 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 GDF11O95390 407 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 NFKB1P19838 968 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 DGKGP49619 791 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ARSDP51689 593 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3BQ3SY89 546 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 LINC00114Q6XXX2 140 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 KRT25Q7Z3Z0 450 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 PODNQ7Z5L7 613 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 BEND7Q8N7W2 519 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ELOA3Q8NG57 546 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 COL26A1Q96A83 441 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 SUV39H2Q9H5I1 410 aa6.9□□□□□ -1.3
HMGB1P29-201ENST00000505659 ADH7P40394 386 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 RGL4Q8IZJ4 473 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 TMEM151AQ8N4L1 468 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 TNFRSF25Q93038 417 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 IGFLR1Q9H665 355 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 STARD13Q9Y3M8 1113 aa6.89□□□□□ -1.31
HMGB1P29-201ENST00000505659 ADARB2-AS1A8MUL3 147 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 PTCD1O75127 700 aaKnown RBP6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 COL8A1P27658 744 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 CCINQ13939 588 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 C8orf86Q6ZUL3 223 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 KCTD17Q8N5Z5 321 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZFATQ9P243 1243 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 MKL2Q9ULH7 1088 aa6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 RTCBQ9Y3I0 505 aaKnown RBP6.88□□□□□ -1.31
HMGB1P29-201ENST00000505659 PHF20L1A8MW92 1017 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZBTB39O15060 712 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 ALBP02768 609 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 EPB42P16452 691 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 TARSP26639 723 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 NEUROD1Q13562 356 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 KANK3Q6NY19 840 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 CMTR1Q8N1G2 835 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 PNMA5Q96PV4 448 aa6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 UBE2OQ9C0C9 1292 aaKnown RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.87□□□□□ -1.31
HMGB1P29-201ENST00000505659 SASH3O75995 380 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 SSFA2P28290 1259 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 TRIP4Q15650 581 aaPredicted RBP6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 PHLDB3Q6NSJ2 640 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 ERICH6Q7L0X2 663 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 DCAF5Q96JK2 942 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 DNAJB12Q9NXW2 375 aaKnown RBP6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 NAGPAQ9UK23 515 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 KCNMB2Q9Y691 235 aa6.86□□□□□ -1.31
HMGB1P29-201ENST00000505659 M0R082 166 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ALAS2P22557 587 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 BRD2P25440 801 aaKnown RBP6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 MTMR3Q13615 1198 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZNF417Q8TAU3 575 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 TRIM11Q96F44 468 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 ZNF587Q96SQ5 575 aaPredicted RBP6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 STIM2Q9P246 746 aa6.85□□□□□ -1.31
HMGB1P29-201ENST00000505659 SLC6A14Q9UN76 642 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms