RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PDIA6Q15084 440 aa12.85□□□□□ -0.35
NUP54-203ENST00000504173 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
NUP54-203ENST00000504173 BEGAINQ9BUH8 593 aa12.85□□□□□ -0.35
NUP54-203ENST00000504173 NFKBIEO00221 500 aa12.84□□□□□ -0.35
NUP54-203ENST00000504173 HYPKQ9NX55 129 aa12.84□□□□□ -0.35
NUP54-203ENST00000504173 ZPR1O75312 459 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 SLC4A2P04920 1241 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 DDR1Q08345 913 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 AIMP1Q12904 312 aaKnown RBP12.83□□□□□ -0.36
NUP54-203ENST00000504173 KIF6Q6ZMV9 814 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 LRP10Q7Z4F1 713 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 DZIP3Q86Y13 1208 aaKnown RBP12.83□□□□□ -0.36
NUP54-203ENST00000504173 XAGE3Q8WTP9 111 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 GCC1Q96CN9 775 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 TBC1D2BQ9UPU7 963 aa12.83□□□□□ -0.36
NUP54-203ENST00000504173 LTBP1Q14766 1721 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 IQCA1LA6NCM1 817 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 TTLL7Q6ZT98 887 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 COPS6Q7L5N1 327 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 L3MBTL3Q96JM7 780 aaPredicted RBP12.82□□□□□ -0.36
NUP54-203ENST00000504173 SMC4Q9NTJ3 1288 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 SRP68Q9UHB9 627 aaKnown RBP12.82□□□□□ -0.36
NUP54-203ENST00000504173 NARFQ9UHQ1 456 aa12.82□□□□□ -0.36
NUP54-203ENST00000504173 USP42Q9H9J4 1324 aaKnown RBP12.82□□□□□ -0.36
NUP54-203ENST00000504173 CA12O43570 354 aa12.81□□□□□ -0.36
NUP54-203ENST00000504173 ALDH1L2Q3SY69 923 aa12.81□□□□□ -0.36
NUP54-203ENST00000504173 USPL1Q5W0Q7 1092 aa12.81□□□□□ -0.36
NUP54-203ENST00000504173 SSH1Q8WYL5 1049 aa12.81□□□□□ -0.36
NUP54-203ENST00000504173 BCL2L13Q9BXK5 485 aa12.81□□□□□ -0.36
NUP54-203ENST00000504173 PHAXQ9H814 394 aaKnown RBP12.81□□□□□ -0.36
NUP54-203ENST00000504173 CACNA1FO60840 1977 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 CAMTA2O94983 1202 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 RARSP54136 660 aaKnown RBP12.8□□□□□ -0.36
NUP54-203ENST00000504173 G2E3Q7L622 706 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 MRPL50Q8N5N7 158 aaKnown RBP12.8□□□□□ -0.36
NUP54-203ENST00000504173 ZBTB3Q9H5J0 574 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 TAF1DQ9H5J8 278 aaPredicted RBP12.8□□□□□ -0.36
NUP54-203ENST00000504173 MAP3K15Q6ZN16 1313 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 DICER1Q9UPY3 1922 aaKnown RBP12.8□□□□□ -0.36
NUP54-203ENST00000504173 SCN7AQ01118 1682 aa12.8□□□□□ -0.36
NUP54-203ENST00000504173 BCORQ6W2J9 1755 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 ADAMTSL1Q8N6G6 1762 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 DLEC1Q9Y238 1755 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 CCDC88AQ3V6T2 1871 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 POLRMTO00411 1230 aaKnown RBP12.79□□□□□ -0.36
NUP54-203ENST00000504173 DDX58O95786 925 aaKnown RBP12.79□□□□□ -0.36
NUP54-203ENST00000504173 ECE1P42892 770 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 FLIIQ13045 1269 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 DGKZQ13574 1117 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 ERFEQ4G0M1 354 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 TTLL6Q8N841 843 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 ZNF652Q9Y2D9 606 aa12.79□□□□□ -0.36
NUP54-203ENST00000504173 SCN4AP35499 1836 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 ERVV-1B6SEH8 477 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 DDNO94850 711 aaPredicted RBP12.78□□□□□ -0.36
NUP54-203ENST00000504173 FKBP5Q13451 457 aaPredicted RBP12.78□□□□□ -0.36
NUP54-203ENST00000504173 FKBP8Q14318 412 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 ANKRD13DQ6ZTN6 518 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 RIC3Q7Z5B4 369 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 PLBD2Q8NHP8 589 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 CAPNS2Q96L46 248 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 LTBP3Q9NS15 1303 aa12.78□□□□□ -0.36
NUP54-203ENST00000504173 RGL2O15211 777 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 TM4SF1P30408 202 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 MAP2K2P36507 400 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 HLFQ16534 295 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 CLEC4GQ6UXB4 293 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 GPR101Q96P66 508 aaPredicted RBP12.77□□□□□ -0.37
NUP54-203ENST00000504173 BCL2L12Q9HB09 334 aa12.77□□□□□ -0.37
NUP54-203ENST00000504173 BCAR3O75815 825 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 BRPF1P55201 1214 aaPredicted RBP12.76□□□□□ -0.37
NUP54-203ENST00000504173 HSP90AB3PQ58FF7 597 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 BICDL1Q6ZP65 573 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 TSKSQ9UJT2 592 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 RCAN3Q9UKA8 241 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 ABT1Q9ULW3 272 aaKnown RBP12.76□□□□□ -0.37
NUP54-203ENST00000504173 KIF16BQ96L93 1317 aa12.76□□□□□ -0.37
NUP54-203ENST00000504173 PI4KAP2A4QPH2 592 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 PTPRCP08575 1304 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 SOX10P56693 466 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 HABP4Q5JVS0 413 aaKnown RBP12.75□□□□□ -0.37
NUP54-203ENST00000504173 TBC1D9BQ66K14 1250 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 KSR2Q6VAB6 950 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 GIGYF2Q6Y7W6 1299 aaKnown RBP12.75□□□□□ -0.37
NUP54-203ENST00000504173 PI4KAP1Q8N8J0 262 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 MAP3K2Q9Y2U5 619 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 ARFGEF2Q9Y6D5 1785 aa12.75□□□□□ -0.37
NUP54-203ENST00000504173 NUP98P52948 1817 aa12.74□□□□□ -0.37
NUP54-203ENST00000504173 TCIRG1Q13488 830 aa12.74□□□□□ -0.37
NUP54-203ENST00000504173 NFIXQ14938 502 aa12.74□□□□□ -0.37
NUP54-203ENST00000504173 CNTROBQ8N137 903 aa12.74□□□□□ -0.37
NUP54-203ENST00000504173 FRAT1Q92837 279 aaPredicted RBP12.74□□□□□ -0.37
NUP54-203ENST00000504173 NOB1Q9ULX3 412 aaKnown RBP12.74□□□□□ -0.37
NUP54-203ENST00000504173 NIP7Q9Y221 180 aaKnown RBP eCLIP12.74□□□□□ -0.37
NUP54-203ENST00000504173 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
NUP54-203ENST00000504173 F6X3S4 739 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 IPO8O15397 1037 aaKnown RBP12.73□□□□□ -0.37
NUP54-203ENST00000504173 GPTP24298 496 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 NEXNQ0ZGT2 675 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 DNAAF4Q8WXU2 420 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms