RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 RAD50Q92878 1312 aa19.66■□□□□ 0.74
COL6A1-206ENST00000498614 TPRNQ4KMQ1 711 aa19.66■□□□□ 0.74
COL6A1-206ENST00000498614 USP25Q9UHP3 1055 aa19.66■□□□□ 0.74
COL6A1-206ENST00000498614 CNPY2Q9Y2B0 182 aa19.66■□□□□ 0.74
COL6A1-206ENST00000498614 SLC39A6Q13433 755 aa19.65■□□□□ 0.74
COL6A1-206ENST00000498614 CLASRPQ8N2M8 674 aaKnown RBP19.65■□□□□ 0.74
COL6A1-206ENST00000498614 HYPKQ9NX55 129 aa19.65■□□□□ 0.74
COL6A1-206ENST00000498614 TMEM87AQ8NBN3 555 aa19.65■□□□□ 0.74
COL6A1-206ENST00000498614 LSG1Q9H089 658 aaKnown RBP19.65■□□□□ 0.74
COL6A1-206ENST00000498614 SPG7Q9UQ90 795 aa19.65■□□□□ 0.74
COL6A1-206ENST00000498614 GLRX3O76003 335 aaKnown RBP19.64■□□□□ 0.74
COL6A1-206ENST00000498614 UVSSAQ2YD98 709 aa19.64■□□□□ 0.74
COL6A1-206ENST00000498614 CCDC183Q5T5S1 534 aa19.64■□□□□ 0.74
COL6A1-206ENST00000498614 TTC41PQ6P2S7 1318 aa19.64■□□□□ 0.73
COL6A1-206ENST00000498614 USP42Q9H9J4 1324 aaKnown RBP19.64■□□□□ 0.73
COL6A1-206ENST00000498614 EPB41L2O43491 1005 aaKnown RBP19.64■□□□□ 0.73
COL6A1-206ENST00000498614 FAM184AQ8NB25 1140 aa19.64■□□□□ 0.73
COL6A1-206ENST00000498614 SUCLG2Q96I99 432 aa19.64■□□□□ 0.73
COL6A1-206ENST00000498614 SNX14Q9Y5W7 946 aa19.64■□□□□ 0.73
COL6A1-206ENST00000498614 COL5A2P05997 1499 aaPredicted RBP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 LARP6Q9BRS8 491 aaKnown RBP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 WDR17Q8IZU2 1322 aa19.63■□□□□ 0.73
COL6A1-206ENST00000498614 DNTTIP2Q5QJE6 756 aaKnown RBP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 MTERF4Q7Z6M4 381 aaKnown RBP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 JARID2Q92833 1246 aaPredicted RBP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 DDX21Q9NR30 783 aaKnown RBP eCLIP19.63■□□□□ 0.73
COL6A1-206ENST00000498614 GRM8O00222 908 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 ADCY5O95622 1261 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 IFIT2P09913 472 aaKnown RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 HCLS1P14317 486 aaPredicted RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 PDIA6Q15084 440 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 RASEFQ8IZ41 740 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 LINS1Q8NG48 757 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 RAPGEF4Q8WZA2 1011 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 TTC12Q9H892 705 aaPredicted RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 DDX58O95786 925 aaKnown RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 C17orf53Q8N3J3 647 aaPredicted RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 MYRIPQ8NFW9 859 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 PIBF1Q8WXW3 757 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 KAZALD1Q96I82 304 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 BICC1Q9H694 974 aaKnown RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 DIAPH3Q9NSV4 1193 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 ECHDC1Q9NTX5 307 aa19.62■□□□□ 0.73
COL6A1-206ENST00000498614 COL22A1Q8NFW1 1626 aaPredicted RBP19.62■□□□□ 0.73
COL6A1-206ENST00000498614 ZSCAN22P10073 491 aaPredicted RBP19.61■□□□□ 0.73
COL6A1-206ENST00000498614 MYL6BP14649 208 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 ZNF790Q6PG37 636 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 C8orf37Q96NL8 207 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 ADAMTS7Q9UKP4 1686 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 TCHHQ07283 1943 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 AACSQ86V21 672 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 TTC14Q96N46 770 aa19.61■□□□□ 0.73
COL6A1-206ENST00000498614 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.61■□□□□ 0.73
COL6A1-206ENST00000498614 JCADQ9P266 1359 aa19.6■□□□□ 0.73
COL6A1-206ENST00000498614 NOLC1Q14978 699 aaKnown RBP eCLIP19.6■□□□□ 0.73
COL6A1-206ENST00000498614 RIC3Q7Z5B4 369 aa19.6■□□□□ 0.73
COL6A1-206ENST00000498614 ERC1Q8IUD2 1116 aa19.6■□□□□ 0.73
COL6A1-206ENST00000498614 C5P01031 1676 aa19.6■□□□□ 0.73
COL6A1-206ENST00000498614 KDM6AO15550 1401 aaPredicted RBP19.6■□□□□ 0.73
COL6A1-206ENST00000498614 AK2P54819 239 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 HDAC5Q9UQL6 1122 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 IGKV5-2P06315 115 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 SYT1P21579 422 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 RUFY3Q7L099 469 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 NFATC2IPQ8NCF5 419 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 TSC1Q92574 1164 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 GPATCH3Q96I76 525 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 SLC52A2Q9HAB3 445 aa19.59■□□□□ 0.73
COL6A1-206ENST00000498614 STX6O43752 255 aa19.58■□□□□ 0.73
COL6A1-206ENST00000498614 CPA1P15085 419 aa19.58■□□□□ 0.73
COL6A1-206ENST00000498614 UBE2HP62256 183 aa19.58■□□□□ 0.73
COL6A1-206ENST00000498614 SASH1O94885 1247 aa19.58■□□□□ 0.72
COL6A1-206ENST00000498614 PTH1RQ03431 593 aa19.58■□□□□ 0.72
COL6A1-206ENST00000498614 SIL1Q9H173 461 aa19.58■□□□□ 0.72
COL6A1-206ENST00000498614 PRDM4Q9UKN5 801 aa19.58■□□□□ 0.72
COL6A1-206ENST00000498614 SCN11AQ9UI33 1791 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 MEGF6O75095 1541 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 UTYO14607 1347 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 FIBPO43427 364 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 PHKG2P15735 406 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 TATP17735 454 aaPredicted RBP19.57■□□□□ 0.72
COL6A1-206ENST00000498614 DTNBO60941 627 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 LETM1O95202 739 aaPredicted RBP19.57■□□□□ 0.72
COL6A1-206ENST00000498614 G3BP1Q13283 466 aaKnown RBP eCLIP19.57■□□□□ 0.72
COL6A1-206ENST00000498614 RUFY2Q8WXA3 655 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 NGLY1Q96IV0 654 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 CCDC8Q9H0W5 538 aaPredicted RBP19.57■□□□□ 0.72
COL6A1-206ENST00000498614 LIMCH1Q9UPQ0 1083 aa19.57■□□□□ 0.72
COL6A1-206ENST00000498614 F13A1P00488 732 aa19.56■□□□□ 0.72
COL6A1-206ENST00000498614 PIP4K2AP48426 406 aaPredicted RBP19.56■□□□□ 0.72
COL6A1-206ENST00000498614 KLHDC4Q8TBB5 520 aa19.56■□□□□ 0.72
COL6A1-206ENST00000498614 XAGE3Q8WTP9 111 aa19.56■□□□□ 0.72
COL6A1-206ENST00000498614 EAF2Q96CJ1 260 aaPredicted RBP19.56■□□□□ 0.72
COL6A1-206ENST00000498614 KDM4AO75164 1064 aa19.56■□□□□ 0.72
COL6A1-206ENST00000498614 CASTP20810 708 aaKnown RBP19.56■□□□□ 0.72
COL6A1-206ENST00000498614 LARGE1O95461 756 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 GIMAP6Q6P9H5 292 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 COPS6Q7L5N1 327 aa19.55■□□□□ 0.72
COL6A1-206ENST00000498614 ZNF496Q96IT1 587 aaPredicted RBP19.55■□□□□ 0.72
COL6A1-206ENST00000498614 PRIMPOLQ96LW4 560 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms