RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 MASTLQ96GX5 879 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 MYD88Q99836 296 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 SMC4Q9NTJ3 1288 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 CWC25Q9NXE8 425 aaPredicted RBP18.64■□□□□ 0.57
LIMS1-213ENST00000496653 ADCY9O60503 1353 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 KLRG2A4D1S0 409 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-213ENST00000496653 NPR1P16066 1061 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 CHRNA5P30532 468 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 NUTM1Q86Y26 1132 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 TTLL6Q8N841 843 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 BCS1LQ9Y276 419 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 KIF16BQ96L93 1317 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 ABCC12Q96J65 1359 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 NUP98P52948 1817 aa18.63■□□□□ 0.57
LIMS1-213ENST00000496653 AFDNP55196 1824 aaKnown RBP18.63■□□□□ 0.57
LIMS1-213ENST00000496653 ATP5J2-PTCD1G3V325 749 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 SRGNP10124 158 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 CRY2Q49AN0 593 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 ERFEQ4G0M1 354 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 G2E3Q7L622 706 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 ZBTB38Q8NAP3 1195 aaPredicted RBP18.62■□□□□ 0.57
LIMS1-213ENST00000496653 NLRP3Q96P20 1036 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 ANKRD36CQ5JPF3 1778 aa18.62■□□□□ 0.57
LIMS1-213ENST00000496653 ARFGEF2Q9Y6D5 1785 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 KCNA3P22001 575 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 BRPF1P55201 1214 aaPredicted RBP18.61■□□□□ 0.57
LIMS1-213ENST00000496653 SLC10A5Q5PT55 438 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 SOGA3Q5TF21 947 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 LINS1Q8NG48 757 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 SSH1Q8WYL5 1049 aa18.61■□□□□ 0.57
LIMS1-213ENST00000496653 RPGRQ92834 1020 aaKnown RBP18.61■□□□□ 0.57
LIMS1-213ENST00000496653 ZNF622Q969S3 477 aaKnown RBP eCLIP18.61■□□□□ 0.57
LIMS1-213ENST00000496653 PCCAP05165 728 aaPredicted RBP18.6■□□□□ 0.57
LIMS1-213ENST00000496653 ALDH1B1P30837 517 aa18.6■□□□□ 0.57
LIMS1-213ENST00000496653 CCDC24Q8N4L8 307 aa18.6■□□□□ 0.57
LIMS1-213ENST00000496653 MRPL50Q8N5N7 158 aaKnown RBP18.6■□□□□ 0.57
LIMS1-213ENST00000496653 CACNA1FO60840 1977 aa18.59■□□□□ 0.57
LIMS1-213ENST00000496653 YBX3P16989 372 aaKnown RBP eCLIP18.59■□□□□ 0.57
LIMS1-213ENST00000496653 KIAA1551Q9HCM1 1747 aa18.59■□□□□ 0.57
LIMS1-213ENST00000496653 NEURL1BA8MQ27 555 aa18.58■□□□□ 0.56
LIMS1-213ENST00000496653 RBM17Q96I25 401 aaKnown RBP18.58■□□□□ 0.56
LIMS1-213ENST00000496653 RARSP54136 660 aaKnown RBP18.57■□□□□ 0.56
LIMS1-213ENST00000496653 CDHR2Q9BYE9 1310 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 IRS4O14654 1257 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 IPO8O15397 1037 aaKnown RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 ALDH1L1O75891 902 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 IGKV5-2P06315 115 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 HOXA10P31260 410 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 PRPF40BQ6NWY9 871 aaKnown RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 FAM89AQ96GI7 184 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 CRAMP1Q96RY5 1269 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 BCL2L13Q9BXK5 485 aa18.56■□□□□ 0.56
LIMS1-213ENST00000496653 API5Q9BZZ5 524 aaKnown RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 TMX4Q9H1E5 349 aaPredicted RBP18.56■□□□□ 0.56
LIMS1-213ENST00000496653 DLEC1Q9Y238 1755 aa18.55■□□□□ 0.56
LIMS1-213ENST00000496653 GCKRQ14397 625 aa18.55■□□□□ 0.56
LIMS1-213ENST00000496653 GRIPAP1Q4V328 841 aa18.55■□□□□ 0.56
LIMS1-213ENST00000496653 SRCIN1Q9C0H9 1055 aa18.55■□□□□ 0.56
LIMS1-213ENST00000496653 WWC3Q9ULE0 1092 aa18.55■□□□□ 0.56
LIMS1-213ENST00000496653 ANKRD31Q8N7Z5 1873 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 F6X3S4 739 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 HCLS1P14317 486 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-213ENST00000496653 CWF19L2Q2TBE0 894 aaKnown RBP18.54■□□□□ 0.56
LIMS1-213ENST00000496653 BEND3Q5T5X7 828 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 CC2D2BQ6DHV5 1058 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 SLC4A10Q6U841 1118 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 DDX46Q7L014 1031 aaKnown RBP18.54■□□□□ 0.56
LIMS1-213ENST00000496653 TMC4Q7Z404 712 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 ARHGAP45Q92619 1136 aa18.54■□□□□ 0.56
LIMS1-213ENST00000496653 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-213ENST00000496653 GOLGB1Q14789 3259 aaKnown RBP18.54■□□□□ 0.56
LIMS1-213ENST00000496653 PDE8AO60658 829 aa18.53■□□□□ 0.56
LIMS1-213ENST00000496653 SF3B3Q15393 1217 aaKnown RBP18.53■□□□□ 0.56
LIMS1-213ENST00000496653 CCDC152Q4G0S7 254 aa18.53■□□□□ 0.56
LIMS1-213ENST00000496653 COL11A2P13942 1736 aaPredicted RBP18.52■□□□□ 0.56
LIMS1-213ENST00000496653 CCDC93Q567U6 631 aa18.52■□□□□ 0.56
LIMS1-213ENST00000496653 BRCA1P38398 1863 aaKnown RBP18.52■□□□□ 0.55
LIMS1-213ENST00000496653 TNRC6CQ9HCJ0 1690 aaKnown RBP18.51■□□□□ 0.55
LIMS1-213ENST00000496653 CCT4P50991 539 aaKnown RBP18.51■□□□□ 0.55
LIMS1-213ENST00000496653 RTL5Q5HYW3 569 aaPredicted RBP18.51■□□□□ 0.55
LIMS1-213ENST00000496653 ARHGAP27Q6ZUM4 889 aa18.51■□□□□ 0.55
LIMS1-213ENST00000496653 UBE3BQ7Z3V4 1068 aa18.51■□□□□ 0.55
LIMS1-213ENST00000496653 H7C1W4 665 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 GRM8O00222 908 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 BBOX1O75936 387 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 CTSWP56202 376 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 RTKN2Q8IZC4 609 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 PLA2G12BQ9BX93 195 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 C9orf78Q9NZ63 289 aaPredicted RBP18.5■□□□□ 0.55
LIMS1-213ENST00000496653 NOB1Q9ULX3 412 aaKnown RBP18.5■□□□□ 0.55
LIMS1-213ENST00000496653 HDAC5Q9UQL6 1122 aa18.5■□□□□ 0.55
LIMS1-213ENST00000496653 PPEF1O14829 653 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-213ENST00000496653 GRAPQ13588 217 aa18.49■□□□□ 0.55
LIMS1-213ENST00000496653 SYNE4Q8N205 404 aa18.49■□□□□ 0.55
LIMS1-213ENST00000496653 GRAPLQ8TC17 118 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-213ENST00000496653 LTBP3Q9NS15 1303 aa18.49■□□□□ 0.55
LIMS1-213ENST00000496653 C21orf2O43822 256 aa18.48■□□□□ 0.55
LIMS1-213ENST00000496653 C3orf67Q6ZVT6 689 aa18.48■□□□□ 0.55
LIMS1-213ENST00000496653 CDC5LQ99459 802 aaKnown RBP18.48■□□□□ 0.55
LIMS1-213ENST00000496653 ARFGEF1Q9Y6D6 1849 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms