RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ENOX2Q16206 610 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 ZGPATQ8N5A5 531 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 NCOA7Q8NI08 942 aa15.2■□□□□ 0.02
PTPRF-215ENST00000496447 MPHOSPH6Q99547 160 aaKnown RBP15.2■□□□□ 0.02
PTPRF-215ENST00000496447 EIF3JO75822 258 aaKnown RBP15.19■□□□□ 0.02
PTPRF-215ENST00000496447 SPA17Q15506 151 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 ANO10Q9NW15 660 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 MICU3Q86XE3 530 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 OGFOD1Q8N543 542 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 CENPHQ9H3R5 247 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 MAPK8IP2Q13387 824 aaPredicted RBP15.19■□□□□ 0.02
PTPRF-215ENST00000496447 CALML4Q96GE6 196 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 F8W031 263 aaPredicted RBP15.19■□□□□ 0.02
PTPRF-215ENST00000496447 SPDYE4A6NLX3 237 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 VPS36Q86VN1 386 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 C19orf44Q9H6X5 657 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 TCP11L1Q9NUJ3 509 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 SAMM50Q9Y512 469 aa15.19■□□□□ 0.02
PTPRF-215ENST00000496447 ZNF518AQ6AHZ1 1483 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 UTP14AQ9BVJ6 771 aaKnown RBP15.18■□□□□ 0.02
PTPRF-215ENST00000496447 METAP2P50579 478 aaKnown RBP eCLIP15.18■□□□□ 0.02
PTPRF-215ENST00000496447 SYCE3A1L190 88 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 KIAA0754O94854 1291 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 HSPA2P54652 639 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 ATP2B3Q16720 1220 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 TAX1BP1Q86VP1 789 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 CNNM3Q8NE01 707 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 NYXQ9GZU5 481 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 CYP7A1P22680 504 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 TFCP2L1Q9NZI6 479 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 STX8Q9UNK0 236 aa15.18■□□□□ 0.02
PTPRF-215ENST00000496447 POLD1P28340 1107 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 CLEC11AQ9Y240 323 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 DUOX2Q9NRD8 1548 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 SIRT1Q96EB6 747 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 IQSEC3Q9UPP2 1182 aaPredicted RBP15.17■□□□□ 0.02
PTPRF-215ENST00000496447 LARP6Q9BRS8 491 aaKnown RBP15.17■□□□□ 0.02
PTPRF-215ENST00000496447 TSPY3P0CV98 308 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 TSPY8P0CW00 308 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 NEK1Q96PY6 1258 aa15.17■□□□□ 0.02
PTPRF-215ENST00000496447 GTPBP4Q9BZE4 634 aaKnown RBP15.17■□□□□ 0.02
PTPRF-215ENST00000496447 GBP2P32456 591 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-215ENST00000496447 AMPD3Q01432 767 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 TSHZ3Q63HK5 1081 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 ZNF804AQ7Z570 1209 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 DZIP3Q86Y13 1208 aaKnown RBP15.16■□□□□ 0.02
PTPRF-215ENST00000496447 LRRC59Q96AG4 307 aaKnown RBP15.16■□□□□ 0.02
PTPRF-215ENST00000496447 NCKAP5LQ9HCH0 1330 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 HMG20BQ9P0W2 317 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 RTCBQ9Y3I0 505 aaKnown RBP15.16■□□□□ 0.02
PTPRF-215ENST00000496447 PARP3Q9Y6F1 533 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 RHPN1Q8TCX5 695 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 RAPGEF6Q8TEU7 1601 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 NBPF14Q5TI25 921 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 SLC26A6Q9BXS9 759 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 RAB11FIP4Q86YS3 637 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 CCDC148Q8NFR7 591 aa15.16■□□□□ 0.02
PTPRF-215ENST00000496447 ORC3Q9UBD5 711 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-215ENST00000496447 IDEP14735 1019 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 TIGD1Q96MW7 591 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 WDR7Q9Y4E6 1490 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 ZFYP08048 801 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-215ENST00000496447 TPTE2Q6XPS3 522 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 RALGAPBQ86X10 1494 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 ATP10BO94823 1461 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 CETN1Q12798 172 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 GRM1Q13255 1194 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 CCDC183Q5T5S1 534 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 LMBR1LQ6UX01 489 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 SLC4A4Q9Y6R1 1079 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 PICALMQ13492 652 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 STXBP4Q6ZWJ1 553 aa15.15■□□□□ 0.02
PTPRF-215ENST00000496447 ALDH1L1O75891 902 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 SFPQP23246 707 aaKnown RBP eCLIP15.14■□□□□ 0.01
PTPRF-215ENST00000496447 EIF4A2Q14240 407 aaKnown RBP15.14■□□□□ 0.01
PTPRF-215ENST00000496447 WTAPQ15007 396 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 CCDC178Q5BJE1 867 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 KSR2Q6VAB6 950 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 GRM8O00222 908 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 GJB2P29033 226 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 FAM193AP78312 1265 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 PPP4R3BQ5MIZ7 849 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 NAA16Q6N069 864 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-215ENST00000496447 FSIP1Q8NA03 581 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 GIMAP7Q8NHV1 300 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 KRT23Q9C075 422 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 PRIMPOLQ96LW4 560 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 LMTK3Q96Q04 1460 aa15.14■□□□□ 0.01
PTPRF-215ENST00000496447 EZRP15311 586 aaKnown RBP15.14■□□□□ 0.01
PTPRF-215ENST00000496447 CTAGE5O15320 804 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 UBA7P41226 1012 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 ANAPC15P60006 121 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 IL15P40933 162 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-215ENST00000496447 SYCP2Q9BX26 1530 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 KIF2AO00139 706 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-215ENST00000496447 TTC22Q5TAA0 569 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 TBC1D9Q6ZT07 1266 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 NFATC2IPQ8NCF5 419 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 CCDC97Q96F63 343 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-215ENST00000496447 TOP1P11387 765 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms