RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 FAM161AQ3B820 660 aa10.63□□□□□ -0.71
VPS13B-206ENST00000496144 PHACTR3Q96KR7 559 aa10.63□□□□□ -0.71
VPS13B-206ENST00000496144 SMC4Q9NTJ3 1288 aa10.62□□□□□ -0.71
VPS13B-206ENST00000496144 DBF4Q9UBU7 674 aaPredicted RBP10.62□□□□□ -0.71
VPS13B-206ENST00000496144 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.62□□□□□ -0.71
VPS13B-206ENST00000496144 HSPA6P17066 643 aa10.62□□□□□ -0.71
VPS13B-206ENST00000496144 DZIP1LQ8IYY4 767 aaKnown RBP10.62□□□□□ -0.71
VPS13B-206ENST00000496144 MPNDQ8N594 471 aa10.62□□□□□ -0.71
VPS13B-206ENST00000496144 MPHOSPH8Q99549 860 aa10.62□□□□□ -0.71
VPS13B-206ENST00000496144 MYO1BO43795 1136 aa10.61□□□□□ -0.71
VPS13B-206ENST00000496144 A1BGP04217 495 aa10.61□□□□□ -0.71
VPS13B-206ENST00000496144 ZNF853P0CG23 659 aa10.61□□□□□ -0.71
VPS13B-206ENST00000496144 ERVV-1B6SEH8 477 aa10.61□□□□□ -0.71
VPS13B-206ENST00000496144 NOB1Q9ULX3 412 aaKnown RBP10.61□□□□□ -0.71
VPS13B-206ENST00000496144 SSH1Q8WYL5 1049 aa10.61□□□□□ -0.71
VPS13B-206ENST00000496144 DCPSQ96C86 337 aaKnown RBP10.61□□□□□ -0.71
VPS13B-206ENST00000496144 ZC3H12CQ9C0D7 883 aaKnown RBP10.6□□□□□ -0.71
VPS13B-206ENST00000496144 KIF16BQ96L93 1317 aa10.6□□□□□ -0.71
VPS13B-206ENST00000496144 TRIM27P14373 513 aa10.6□□□□□ -0.71
VPS13B-206ENST00000496144 OGFOD1Q8N543 542 aa10.6□□□□□ -0.71
VPS13B-206ENST00000496144 FTSJ3Q8IY81 847 aaKnown RBP10.6□□□□□ -0.71
VPS13B-206ENST00000496144 C9orf78Q9NZ63 289 aaPredicted RBP10.6□□□□□ -0.71
VPS13B-206ENST00000496144 TMOD2Q9NZR1 351 aa10.6□□□□□ -0.71
VPS13B-206ENST00000496144 ZNF428Q96B54 188 aa10.6□□□□□ -0.71
VPS13B-206ENST00000496144 NOL10Q9BSC4 688 aaKnown RBP10.59□□□□□ -0.71
VPS13B-206ENST00000496144 PCDHB15Q9Y5E8 787 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 ATF7IPQ6VMQ6 1270 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 ZNF408Q9H9D4 720 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 MAP3K15Q6ZN16 1313 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 N4BP2Q86UW6 1770 aaPredicted RBP10.59□□□□□ -0.71
VPS13B-206ENST00000496144 TNS1Q9HBL0 1735 aaKnown RBP10.59□□□□□ -0.71
VPS13B-206ENST00000496144 RGL2O15211 777 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 DCTN1Q14203 1278 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 SYNE4Q8N205 404 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 MIS18AQ9NYP9 233 aa10.59□□□□□ -0.71
VPS13B-206ENST00000496144 DOT1LQ8TEK3 1739 aa10.58□□□□□ -0.71
VPS13B-206ENST00000496144 RGPD3A6NKT7 1758 aaPredicted RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 RGPD4Q7Z3J3 1758 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 FKBP4Q02790 459 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 TCIRG1Q13488 830 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 TBC1D9BQ66K14 1250 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 ANKRD18AQ8IVF6 992 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 BTAF1O14981 1849 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 BBOX1O75936 387 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 PRPF40BQ6NWY9 871 aaKnown RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 PDGFDQ9GZP0 370 aaPredicted RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 MBIPQ9NS73 344 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 CWC25Q9NXE8 425 aaPredicted RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 DDX19BQ9UMR2 479 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 IARSP41252 1262 aaKnown RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 ARHGEF6Q15052 776 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 MRPL50Q8N5N7 158 aaKnown RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 DDRGK1Q96HY6 314 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 RWDD1Q9H446 243 aaPredicted RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 SH3TC1Q8TE82 1336 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 RBM5P52756 815 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 FKBP5Q13451 457 aaPredicted RBP10.58□□□□□ -0.72
VPS13B-206ENST00000496144 CHADLQ6NUI6 762 aa10.58□□□□□ -0.72
VPS13B-206ENST00000496144 POLRMTO00411 1230 aaKnown RBP10.57□□□□□ -0.72
VPS13B-206ENST00000496144 CRYBG1Q9Y4K1 1723 aa10.57□□□□□ -0.72
VPS13B-206ENST00000496144 NUP188Q5SRE5 1749 aa10.57□□□□□ -0.72
VPS13B-206ENST00000496144 RGS3P49796 1198 aa10.57□□□□□ -0.72
VPS13B-206ENST00000496144 OS9Q13438 667 aaPredicted RBP10.57□□□□□ -0.72
VPS13B-206ENST00000496144 IPO8O15397 1037 aaKnown RBP10.57□□□□□ -0.72
VPS13B-206ENST00000496144 TRIM34Q9BYJ4 488 aa10.57□□□□□ -0.72
VPS13B-206ENST00000496144 YBX3P16989 372 aaKnown RBP eCLIP10.56□□□□□ -0.72
VPS13B-206ENST00000496144 HDAC1Q13547 482 aaPredicted RBP10.56□□□□□ -0.72
VPS13B-206ENST00000496144 CIAPIN1Q6FI81 312 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 ANKRD13DQ6ZTN6 518 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 C2orf69Q8N8R5 385 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 ANKRD2Q9GZV1 360 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 CHMP4BQ9H444 224 aaKnown RBP10.56□□□□□ -0.72
VPS13B-206ENST00000496144 CNNM1Q9NRU3 951 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 GORABQ5T7V8 394 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 ITPRIPQ8IWB1 547 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 SULF1Q8IWU6 871 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 CCDC24Q8N4L8 307 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 VAMP4O75379 141 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 HOXB7P09629 217 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 INTS5Q6P9B9 1019 aaKnown RBP10.56□□□□□ -0.72
VPS13B-206ENST00000496144 LDHDQ86WU2 507 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 TMEM57Q8N5G2 664 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 XAGE3Q8WTP9 111 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 MYD88Q99836 296 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 GNL3LQ9NVN8 582 aaKnown RBP10.56□□□□□ -0.72
VPS13B-206ENST00000496144 GGA1Q9UJY5 639 aa10.56□□□□□ -0.72
VPS13B-206ENST00000496144 RASSF7Q02833 373 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 PRR5LQ6MZQ0 368 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 ARHGAP45Q92619 1136 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 THUMPD2Q9BTF0 503 aaKnown RBP10.55□□□□□ -0.72
VPS13B-206ENST00000496144 CWC22Q9HCG8 908 aaKnown RBP10.55□□□□□ -0.72
VPS13B-206ENST00000496144 RGPD5Q99666 1765 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 ELL2O00472 640 aaPredicted RBP10.55□□□□□ -0.72
VPS13B-206ENST00000496144 IL17REQ8NFR9 667 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 KDRP35968 1356 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 GLTPD2A6NH11 291 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 RREB1Q92766 1687 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 SLC4A10Q6U841 1118 aa10.55□□□□□ -0.72
VPS13B-206ENST00000496144 EIF5P55010 431 aaKnown RBP10.54□□□□□ -0.72
VPS13B-206ENST00000496144 PLBD2Q8NHP8 589 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms