RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	PI4KAP1	Q8N8J0	262 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	TRMT112	Q9UI30	125 aa	Known RBP	12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	MAP3K2	Q9Y2U5	619 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	BRCA1	P38398	1863 aa	Known RBP	12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	COL11A2	P13942	1736 aa	Predicted RBP	12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	GRIN3B	O60391	1043 aa		12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	KSR2	Q6VAB6	950 aa		12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	SYNE4	Q8N205	404 aa		12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	CACNA1S	Q13698	1873 aa		12.57	□□□□□ -0.4
CALD1-223	ENST00000496024	HCLS1	P14317	486 aa	Predicted RBP	12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	TRMT2A	Q8IZ69	625 aa	Known RBP	12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	TTLL6	Q8N841	843 aa		12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	ISCA1	Q9BUE6	129 aa		12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	METTL22	Q9BUU2	404 aa	Predicted RBP	12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	BCL2L13	Q9BXK5	485 aa		12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	ADCY9	O60503	1353 aa		12.56	□□□□□ -0.4
CALD1-223	ENST00000496024	TNRC6C	Q9HCJ0	1690 aa	Known RBP	12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	SRGN	P10124	158 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	ARHGAP27	Q6ZUM4	889 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	JARID2	Q92833	1246 aa	Predicted RBP	12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	FAM89A	Q96GI7	184 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	PDZRN3	Q9UPQ7	1066 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	DLEC1	Q9Y238	1755 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	SH3TC1	Q8TE82	1336 aa		12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.55	□□□□□ -0.4
CALD1-223	ENST00000496024	CHD4	Q14839	1912 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024		F6X3S4	739 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	NPR1	P16066	1061 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	NEXN	Q0ZGT2	675 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	STYK1	Q6J9G0	422 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	C3orf67	Q6ZVT6	689 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	SSH1	Q8WYL5	1049 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	MASTL	Q96GX5	879 aa		12.54	□□□□□ -0.4
CALD1-223	ENST00000496024	ARFGEF1	Q9Y6D6	1849 aa		12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	TRIM28	Q13263	835 aa	Known RBP	12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	CWF19L2	Q2TBE0	894 aa	Known RBP	12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	MRPL50	Q8N5N7	158 aa	Known RBP	12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	DNAAF4	Q8WXU2	420 aa		12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	RPGR	Q92834	1020 aa	Known RBP	12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	CNKSR1	Q969H4	720 aa		12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	NLRP3	Q96P20	1036 aa		12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	CWC25	Q9NXE8	425 aa	Predicted RBP	12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	SLX4	Q8IY92	1834 aa		12.53	□□□□□ -0.4
CALD1-223	ENST00000496024	KLRG2	A4D1S0	409 aa	Predicted RBP	12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	C21orf2	O43822	256 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	IGKV5-2	P06315	115 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	YY1	P25490	414 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	SLC10A5	Q5PT55	438 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	PRPF40B	Q6NWY9	871 aa	Known RBP	12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	SLC4A10	Q6U841	1118 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	CCDC191	Q8NCU4	936 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	SMC4	Q9NTJ3	1288 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	ZBED9	Q6R2W3	1325 aa		12.52	□□□□□ -0.41
CALD1-223	ENST00000496024	IRS4	O14654	1257 aa	Predicted RBP	12.51	□□□□□ -0.41
CALD1-223	ENST00000496024	RNF123	Q5XPI4	1314 aa		12.51	□□□□□ -0.41
CALD1-223	ENST00000496024	LAMB2	P55268	1798 aa		12.51	□□□□□ -0.41
CALD1-223	ENST00000496024	NEURL1B	A8MQ27	555 aa		12.5	□□□□□ -0.41
CALD1-223	ENST00000496024	CRY2	Q49AN0	593 aa		12.5	□□□□□ -0.41
CALD1-223	ENST00000496024	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.5	□□□□□ -0.41
CALD1-223	ENST00000496024	RBM17	Q96I25	401 aa	Known RBP	12.5	□□□□□ -0.41
CALD1-223	ENST00000496024	TAF1	P21675	1872 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	DDX60	Q8IY21	1712 aa	Known RBP	12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	RIC1	Q4ADV7	1423 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	PCCA	P05165	728 aa	Predicted RBP	12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	CT47B1	P0C2W7	299 aa	Predicted RBP	12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	ALDH1B1	P30837	517 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	RASSF7	Q02833	373 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	ALDH1L2	Q3SY69	923 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	OLFM4	Q6UX06	510 aa		12.49	□□□□□ -0.41
CALD1-223	ENST00000496024	HOXA10	P31260	410 aa	Predicted RBP	12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	RARS	P54136	660 aa	Known RBP	12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	DDX46	Q7L014	1031 aa	Known RBP	12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	UBE3B	Q7Z3V4	1068 aa		12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	LINS1	Q8NG48	757 aa		12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.48	□□□□□ -0.41
CALD1-223	ENST00000496024	CCDC88A	Q3V6T2	1871 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	ABCC4	O15439	1325 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	PDE8A	O60658	829 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	GCKR	Q14397	625 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	BEND3	Q5T5X7	828 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	SLC51A	Q86UW1	340 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	YTHDC1	Q96MU7	727 aa	Known RBP	12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	CRAMP1	Q96RY5	1269 aa		12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	NOB1	Q9ULX3	412 aa	Known RBP	12.47	□□□□□ -0.41
CALD1-223	ENST00000496024	PTPRC	P08575	1304 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	NFKBIE	O00221	500 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	PPEF1	O14829	653 aa	Predicted RBP	12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	HSP90B1	P14625	803 aa	Known RBP	12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	C9orf131	Q5VYM1	1079 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	C7orf43	Q8WVR3	580 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	SRCIN1	Q9C0H9	1055 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	RNF181	Q9P0P0	153 aa		12.46	□□□□□ -0.41
CALD1-223	ENST00000496024	SBF1	O95248	1867 aa		12.46	□□□□□ -0.42
CALD1-223	ENST00000496024	CDHR2	Q9BYE9	1310 aa		12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	FER1L6	Q2WGJ9	1857 aa		12.45	□□□□□ -0.42
CALD1-223	ENST00000496024		H7C1W4	665 aa		12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	BCAR3	O75815	825 aa		12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	SF3B3	Q15393	1217 aa	Known RBP	12.45	□□□□□ -0.42
CALD1-223	ENST00000496024	CCDC93	Q567U6	631 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms