RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 IFT43Q96FT9 208 aa10.38□□□□□ -0.75
CCDC39-207ENST00000495817 EFCC1Q9HA90 598 aa10.38□□□□□ -0.75
CCDC39-207ENST00000495817 C11orf16Q9NQ32 467 aa10.38□□□□□ -0.75
CCDC39-207ENST00000495817 CCDC9Q9Y3X0 531 aaKnown RBP10.38□□□□□ -0.75
CCDC39-207ENST00000495817 CELA2BP08218 269 aaPredicted RBP10.37□□□□□ -0.75
CCDC39-207ENST00000495817 BCRP11274 1271 aa10.37□□□□□ -0.75
CCDC39-207ENST00000495817 BRD2P25440 801 aaKnown RBP10.37□□□□□ -0.75
CCDC39-207ENST00000495817 ADH6P28332 368 aa10.37□□□□□ -0.75
CCDC39-207ENST00000495817 ARSDP51689 593 aa10.37□□□□□ -0.75
CCDC39-207ENST00000495817 ENAMQ9NRM1 1142 aa10.37□□□□□ -0.75
CCDC39-207ENST00000495817 PRR12Q9ULL5 1215 aa10.37□□□□□ -0.75
CCDC39-207ENST00000495817 MICAL2O94851 1124 aa10.36□□□□□ -0.75
CCDC39-207ENST00000495817 INPP5BP32019 993 aa10.36□□□□□ -0.75
CCDC39-207ENST00000495817 IDH3AP50213 366 aa10.36□□□□□ -0.75
CCDC39-207ENST00000495817 SFSWAPQ12872 951 aaKnown RBP10.36□□□□□ -0.75
CCDC39-207ENST00000495817 LYPD4Q6UWN0 246 aa10.36□□□□□ -0.75
CCDC39-207ENST00000495817 SAP130Q9H0E3 1048 aa10.36□□□□□ -0.75
CCDC39-207ENST00000495817 OIP5O43482 229 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 SPEM2Q0P670 501 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 CAPN12Q6ZSI9 719 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 ABTB2Q8N961 1025 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 HELQQ8TDG4 1101 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 WHAMMQ8TF30 809 aa10.35□□□□□ -0.75
CCDC39-207ENST00000495817 TNFRSF10BO14763 440 aa10.34□□□□□ -0.75
CCDC39-207ENST00000495817 NAA30Q147X3 362 aaPredicted RBP10.34□□□□□ -0.75
CCDC39-207ENST00000495817 STIM2Q9P246 746 aa10.34□□□□□ -0.75
CCDC39-207ENST00000495817 GGA1Q9UJY5 639 aa10.34□□□□□ -0.75
CCDC39-207ENST00000495817 CARNS1A5YM72 827 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 SIN3BO75182 1162 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 ARHGEF15O94989 841 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 PHLDB3Q6NSJ2 640 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 TREML1Q86YW5 311 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 FAM13BQ9NYF5 915 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 SEPT3Q9UH03 358 aa10.33□□□□□ -0.76
CCDC39-207ENST00000495817 ETFBKMTQ8IXQ9 262 aa10.32□□□□□ -0.76
CCDC39-207ENST00000495817 SLC30A3Q99726 388 aa10.31□□□□□ -0.76
CCDC39-207ENST00000495817 GZF1Q9H116 711 aaPredicted RBP10.31□□□□□ -0.76
CCDC39-207ENST00000495817 NEURL1BA8MQ27 555 aa10.3□□□□□ -0.76
CCDC39-207ENST00000495817 EPXP11678 715 aa10.3□□□□□ -0.76
CCDC39-207ENST00000495817 SYT9Q86SS6 491 aa10.3□□□□□ -0.76
CCDC39-207ENST00000495817 PCBP4P57723 403 aaKnown RBP10.29□□□□□ -0.76
CCDC39-207ENST00000495817 CCINQ13939 588 aa10.29□□□□□ -0.76
CCDC39-207ENST00000495817 GTF3C2Q8WUA4 911 aaPredicted RBP10.29□□□□□ -0.76
CCDC39-207ENST00000495817 EDARADDQ8WWZ3 215 aa10.29□□□□□ -0.76
CCDC39-207ENST00000495817 TNFRSF25Q93038 417 aa10.29□□□□□ -0.76
CCDC39-207ENST00000495817 DNMT3AQ9Y6K1 912 aaPredicted RBP10.29□□□□□ -0.76
CCDC39-207ENST00000495817 OPLAHO14841 1288 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 SF3B2Q13435 895 aaKnown RBP10.28□□□□□ -0.76
CCDC39-207ENST00000495817 GRIN2CQ14957 1233 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 FCHSD1Q86WN1 690 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 GALNT6Q8NCL4 622 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 PNMA5Q96PV4 448 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 GSX2Q9BZM3 304 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 KLF15Q9UIH9 416 aa10.28□□□□□ -0.76
CCDC39-207ENST00000495817 RTCBQ9Y3I0 505 aaKnown RBP10.28□□□□□ -0.76
CCDC39-207ENST00000495817 ADARB2-AS1A8MUL3 147 aa10.27□□□□□ -0.77
CCDC39-207ENST00000495817 EGFRP00533 1210 aa10.27□□□□□ -0.77
CCDC39-207ENST00000495817 GRNP28799 593 aaKnown RBP10.27□□□□□ -0.77
CCDC39-207ENST00000495817 ARID4AP29374 1257 aaPredicted RBP10.27□□□□□ -0.77
CCDC39-207ENST00000495817 NEDD1Q8NHV4 660 aa10.27□□□□□ -0.77
CCDC39-207ENST00000495817 EGFL7Q9UHF1 273 aa10.27□□□□□ -0.77
CCDC39-207ENST00000495817 ADAMTS8Q9UP79 889 aa10.27□□□□□ -0.77
CCDC39-207ENST00000495817 ELOA3CA0A087WX78 387 aaPredicted RBP10.26□□□□□ -0.77
CCDC39-207ENST00000495817 ELOA3DA6NLF2 546 aaPredicted RBP10.26□□□□□ -0.77
CCDC39-207ENST00000495817 ZAP70P43403 619 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 ELOA3BQ3SY89 546 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 TMCO4Q5TGY1 634 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 RGL4Q8IZJ4 473 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 ELOA3Q8NG57 546 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 PIK3R5Q8WYR1 880 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 BHMTQ93088 406 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 MDFIQ99750 246 aa10.26□□□□□ -0.77
CCDC39-207ENST00000495817 GNEQ9Y223 722 aaKnown RBP10.26□□□□□ -0.77
CCDC39-207ENST00000495817 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.26□□□□□ -0.77
CCDC39-207ENST00000495817 SHISA8B8ZZ34 492 aa10.25□□□□□ -0.77
CCDC39-207ENST00000495817 RNF225M0QZC1 329 aaPredicted RBP10.25□□□□□ -0.77
CCDC39-207ENST00000495817 MAP3K6O95382 1288 aa10.25□□□□□ -0.77
CCDC39-207ENST00000495817 SCNN1AP37088 669 aa10.25□□□□□ -0.77
CCDC39-207ENST00000495817 C1orf229Q6ZS94 237 aaPredicted RBP10.25□□□□□ -0.77
CCDC39-207ENST00000495817 NPR3P17342 541 aa10.24□□□□□ -0.77
CCDC39-207ENST00000495817 ALAS2P22557 587 aa10.24□□□□□ -0.77
CCDC39-207ENST00000495817 FAM26DQ5JW98 314 aa10.24□□□□□ -0.77
CCDC39-207ENST00000495817 ALKBH2Q6NS38 261 aa10.24□□□□□ -0.77
CCDC39-207ENST00000495817 RAB44Q7Z6P3 723 aaPredicted RBP10.24□□□□□ -0.77
CCDC39-207ENST00000495817 XYLBO75191 536 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 FAM13AO94988 1023 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 RPLP1P05386 114 aaKnown RBP10.23□□□□□ -0.77
CCDC39-207ENST00000495817 NFKB1P19838 968 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 AMPD1P23109 780 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 MARSP56192 900 aaKnown RBP10.23□□□□□ -0.77
CCDC39-207ENST00000495817 KANK3Q6NY19 840 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 PODNQ7Z5L7 613 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 SCARF2Q96GP6 870 aaPredicted RBP10.23□□□□□ -0.77
CCDC39-207ENST00000495817 FNDC3AQ9Y2H6 1198 aaKnown RBP10.23□□□□□ -0.77
CCDC39-207ENST00000495817 KCNMB2Q9Y691 235 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 IVNS1ABPQ9Y6Y0 642 aa10.23□□□□□ -0.77
CCDC39-207ENST00000495817 PCSK7Q16549 785 aa10.22□□□□□ -0.77
CCDC39-207ENST00000495817 NOM1Q5C9Z4 860 aaKnown RBP10.22□□□□□ -0.77
CCDC39-207ENST00000495817 CMTR1Q8N1G2 835 aaKnown RBP10.22□□□□□ -0.77
CCDC39-207ENST00000495817 ZBTB39O15060 712 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms