RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 EIF5P55010 431 aaKnown RBP13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 RRP1P56182 461 aaKnown RBP13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 FKBP4Q02790 459 aaKnown RBP eCLIP13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 DGKZQ13574 1117 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 CCDC93Q567U6 631 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 CST9Q5W186 159 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 TBC1D9BQ66K14 1250 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 BICDL1Q6ZP65 573 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 VSIG10Q8N0Z9 540 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 GPC2Q8N158 579 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 MASTLQ96GX5 879 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.21
PDLIM1-205ENST00000493949 A0A087WZG4 1122 aa13.7□□□□□ -0.22
PDLIM1-205ENST00000493949 BRPF1P55201 1214 aaPredicted RBP13.7□□□□□ -0.22
PDLIM1-205ENST00000493949 HHIPL1Q96JK4 782 aa13.7□□□□□ -0.22
PDLIM1-205ENST00000493949 SLC52A2Q9HAB3 445 aa13.7□□□□□ -0.22
PDLIM1-205ENST00000493949 AOC2O75106 756 aa13.69□□□□□ -0.22
PDLIM1-205ENST00000493949 MKRN4PQ13434 485 aaPredicted RBP13.69□□□□□ -0.22
PDLIM1-205ENST00000493949 CDCA8Q53HL2 280 aa13.69□□□□□ -0.22
PDLIM1-205ENST00000493949 PAXIP1Q6ZW49 1069 aaPredicted RBP13.69□□□□□ -0.22
PDLIM1-205ENST00000493949 AEBP1Q8IUX7 1158 aa13.69□□□□□ -0.22
PDLIM1-205ENST00000493949 SSUH2Q9Y2M2 353 aa13.68□□□□□ -0.22
PDLIM1-205ENST00000493949 FMR1Q06787 632 aaKnown RBP eCLIP13.67□□□□□ -0.22
PDLIM1-205ENST00000493949 SAPCD2Q86UD0 394 aa13.67□□□□□ -0.22
PDLIM1-205ENST00000493949 CCDC24Q8N4L8 307 aa13.67□□□□□ -0.22
PDLIM1-205ENST00000493949 CNBD1Q8NA66 436 aa13.67□□□□□ -0.22
PDLIM1-205ENST00000493949 ZNF277Q9NRM2 450 aaPredicted RBP13.67□□□□□ -0.22
PDLIM1-205ENST00000493949 SNED1Q8TER0 1413 aa13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 CANXP27824 592 aaKnown RBP13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 IARSP41252 1262 aaKnown RBP13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 GRM1Q13255 1194 aa13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 SLC39A6Q13433 755 aa13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 RTKN2Q8IZC4 609 aa13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 RCAN3Q9UKA8 241 aa13.66□□□□□ -0.22
PDLIM1-205ENST00000493949 KLRG2A4D1S0 409 aaPredicted RBP13.65□□□□□ -0.22
PDLIM1-205ENST00000493949 GABBR2O75899 941 aa13.65□□□□□ -0.22
PDLIM1-205ENST00000493949 ST5P78524 1137 aa13.65□□□□□ -0.22
PDLIM1-205ENST00000493949 AKAP4Q5JQC9 854 aa13.65□□□□□ -0.22
PDLIM1-205ENST00000493949 USP50Q70EL3 339 aaPredicted RBP13.65□□□□□ -0.22
PDLIM1-205ENST00000493949 AKAP11Q9UKA4 1901 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 TRAF5O00463 557 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 STARD3NLO95772 234 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 NPR1P16066 1061 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 SOX10P56693 466 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 SETDB2Q96T68 719 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 LGR6Q9HBX8 967 aa13.64□□□□□ -0.23
PDLIM1-205ENST00000493949 COL4A5P29400 1685 aa13.63□□□□□ -0.23
PDLIM1-205ENST00000493949 SCNN1DP51172 638 aa13.63□□□□□ -0.23
PDLIM1-205ENST00000493949 PSMD1Q99460 953 aa13.63□□□□□ -0.23
PDLIM1-205ENST00000493949 POLR3GLQ9BT43 218 aa13.63□□□□□ -0.23
PDLIM1-205ENST00000493949 RNMTO43148 476 aaKnown RBP13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 LMOD1P29536 600 aaPredicted RBP13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 IL6STP40189 918 aaPredicted RBP13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 EPS15P42566 896 aa13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 CIAPIN1Q6FI81 312 aa13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 SYNE4Q8N205 404 aa13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 GCC1Q96CN9 775 aa13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 TBC1D2BQ9UPU7 963 aa13.62□□□□□ -0.23
PDLIM1-205ENST00000493949 CAMTA2O94983 1202 aa13.61□□□□□ -0.23
PDLIM1-205ENST00000493949 OLFM4Q6UX06 510 aa13.61□□□□□ -0.23
PDLIM1-205ENST00000493949 NGEFQ8N5V2 710 aa13.61□□□□□ -0.23
PDLIM1-205ENST00000493949 JDP2Q8WYK2 163 aa13.61□□□□□ -0.23
PDLIM1-205ENST00000493949 BACH2Q9BYV9 841 aa13.61□□□□□ -0.23
PDLIM1-205ENST00000493949 SIPA1L3O60292 1781 aaPredicted RBP13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 EIF6P56537 245 aaKnown RBP13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 NOGQ13253 232 aa13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 SULT6B1Q6IMI4 303 aa13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 TEX13AQ9BXU3 409 aaPredicted RBP13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 SAGE1Q9NXZ1 904 aa13.6□□□□□ -0.23
PDLIM1-205ENST00000493949 NPC1L1Q9UHC9 1359 aa13.59□□□□□ -0.23
PDLIM1-205ENST00000493949 NPHP1O15259 732 aa13.59□□□□□ -0.23
PDLIM1-205ENST00000493949 CELF2O95319 508 aaKnown RBP13.59□□□□□ -0.23
PDLIM1-205ENST00000493949 PGAP2Q9UHJ9 254 aa13.59□□□□□ -0.23
PDLIM1-205ENST00000493949 GJA3Q9Y6H8 435 aa13.59□□□□□ -0.23
PDLIM1-205ENST00000493949 ALDH1B1P30837 517 aa13.58□□□□□ -0.24
PDLIM1-205ENST00000493949 CLEC4GQ6UXB4 293 aa13.58□□□□□ -0.24
PDLIM1-205ENST00000493949 HEG1Q9ULI3 1381 aa13.58□□□□□ -0.24
PDLIM1-205ENST00000493949 PDE4AP27815 886 aa13.57□□□□□ -0.24
PDLIM1-205ENST00000493949 LHX8Q68G74 356 aa13.57□□□□□ -0.24
PDLIM1-205ENST00000493949 CC2D2BQ6DHV5 1058 aa13.57□□□□□ -0.24
PDLIM1-205ENST00000493949 ZIC5Q96T25 663 aa13.57□□□□□ -0.24
PDLIM1-205ENST00000493949 ADARB2Q9NS39 739 aaKnown RBP13.57□□□□□ -0.24
PDLIM1-205ENST00000493949 PRR29P0C7W0 189 aa13.56□□□□□ -0.24
PDLIM1-205ENST00000493949 NBPF5PQ86XG9 351 aaPredicted RBP13.56□□□□□ -0.24
PDLIM1-205ENST00000493949 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.56□□□□□ -0.24
PDLIM1-205ENST00000493949 POLR2AP24928 1970 aaKnown RBP13.56□□□□□ -0.24
PDLIM1-205ENST00000493949 RGL2O15211 777 aa13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 PER1O15534 1290 aaPredicted RBP13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 IL13P35225 146 aa13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 GRIPAP1Q4V328 841 aa13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 NBPF15Q8N660 670 aa13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 ZNF496Q96IT1 587 aaPredicted RBP13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 GPRC5DQ9NZD1 345 aa13.55□□□□□ -0.24
PDLIM1-205ENST00000493949 HABP4Q5JVS0 413 aaKnown RBP13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 TPTE2Q6XPS3 522 aa13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 CENPQQ7L2Z9 268 aaPredicted RBP13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 CTU1Q7Z7A3 348 aaKnown RBP13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 TTC5Q8N0Z6 440 aa13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 ZC3H15Q8WU90 426 aaKnown RBP13.54□□□□□ -0.24
PDLIM1-205ENST00000493949 ZNF330Q9Y3S2 320 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms