RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 APLP1P51693 650 aa16.11■□□□□ 0.17
UPF3A-210ENST00000493727 CABP4P57796 275 aa16.11■□□□□ 0.17
UPF3A-210ENST00000493727 NLGN1Q8N2Q7 840 aa16.11■□□□□ 0.17
UPF3A-210ENST00000493727 BCS1LQ9Y276 419 aa16.11■□□□□ 0.17
UPF3A-210ENST00000493727 RTCBQ9Y3I0 505 aaKnown RBP16.11■□□□□ 0.17
UPF3A-210ENST00000493727 A0A0G2JLW4 131 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 GYS1P13807 737 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 COL9A1P20849 921 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 TRAPPC3LQ5T215 181 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 RC3H1Q5TC82 1133 aaKnown RBP16.1■□□□□ 0.17
UPF3A-210ENST00000493727 DNAJC5GQ8N7S2 189 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 CDHR5Q9HBB8 845 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 ADAMTS7Q9UKP4 1686 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 TJP1Q07157 1748 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 SBF1O95248 1867 aa16.1■□□□□ 0.17
UPF3A-210ENST00000493727 CCDC184Q52MB2 194 aa16.09■□□□□ 0.17
UPF3A-210ENST00000493727 DMRTA1Q5VZB9 504 aa16.09■□□□□ 0.17
UPF3A-210ENST00000493727 SULT6B1Q6IMI4 303 aa16.09■□□□□ 0.17
UPF3A-210ENST00000493727 NMRK2Q9NPI5 230 aa16.09■□□□□ 0.17
UPF3A-210ENST00000493727 VIRMAQ69YN4 1812 aaKnown RBP16.09■□□□□ 0.17
UPF3A-210ENST00000493727 DPEP1P16444 411 aa16.08■□□□□ 0.16
UPF3A-210ENST00000493727 IL13P35225 146 aa16.08■□□□□ 0.16
UPF3A-210ENST00000493727 AEBP1Q8IUX7 1158 aa16.08■□□□□ 0.16
UPF3A-210ENST00000493727 CCDC87Q9NVE4 849 aa16.08■□□□□ 0.16
UPF3A-210ENST00000493727 PCDH10Q9P2E7 1040 aa16.08■□□□□ 0.16
UPF3A-210ENST00000493727 PPP1R3GB7ZBB8 358 aa16.07■□□□□ 0.16
UPF3A-210ENST00000493727 TULP1O00294 542 aaPredicted RBP16.07■□□□□ 0.16
UPF3A-210ENST00000493727 RPS6KA4O75676 772 aa16.07■□□□□ 0.16
UPF3A-210ENST00000493727 KCNA3P22001 575 aa16.07■□□□□ 0.16
UPF3A-210ENST00000493727 TNRC6CQ9HCJ0 1690 aaKnown RBP16.06■□□□□ 0.16
UPF3A-210ENST00000493727 WDR43Q15061 677 aaKnown RBP eCLIP16.06■□□□□ 0.16
UPF3A-210ENST00000493727 NPDC1Q9NQX5 325 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-210ENST00000493727 DIAPH1O60610 1272 aaKnown RBP16.05■□□□□ 0.16
UPF3A-210ENST00000493727 FCHSD2O94868 740 aa16.05■□□□□ 0.16
UPF3A-210ENST00000493727 AKAP4Q5JQC9 854 aa16.05■□□□□ 0.16
UPF3A-210ENST00000493727 ARHGAP27Q6ZUM4 889 aa16.05■□□□□ 0.16
UPF3A-210ENST00000493727 NUDCQ9Y266 331 aa16.05■□□□□ 0.16
UPF3A-210ENST00000493727 RFC4P35249 363 aa16.04■□□□□ 0.16
UPF3A-210ENST00000493727 LSM11P83369 360 aaKnown RBP eCLIP16.04■□□□□ 0.16
UPF3A-210ENST00000493727 NFATC2IPQ8NCF5 419 aa16.04■□□□□ 0.16
UPF3A-210ENST00000493727 RBM46Q8TBY0 533 aaKnown RBP16.04■□□□□ 0.16
UPF3A-210ENST00000493727 PARP3Q9Y6F1 533 aa16.04■□□□□ 0.16
UPF3A-210ENST00000493727 KCPQ6ZWJ8 1503 aa16.04■□□□□ 0.16
UPF3A-210ENST00000493727 USP42Q9H9J4 1324 aaKnown RBP16.03■□□□□ 0.16
UPF3A-210ENST00000493727 U2SURPO15042 1029 aaKnown RBP16.03■□□□□ 0.16
UPF3A-210ENST00000493727 C9orf131Q5VYM1 1079 aa16.03■□□□□ 0.16
UPF3A-210ENST00000493727 FAM9BQ8IZU0 186 aa16.03■□□□□ 0.16
UPF3A-210ENST00000493727 COL3A1P02461 1466 aaPredicted RBP16.03■□□□□ 0.16
UPF3A-210ENST00000493727 PTCD1O75127 700 aaKnown RBP16.02■□□□□ 0.16
UPF3A-210ENST00000493727 DDR1Q08345 913 aa16.02■□□□□ 0.16
UPF3A-210ENST00000493727 ZBED2Q9BTP6 218 aa16.02■□□□□ 0.16
UPF3A-210ENST00000493727 AFDNP55196 1824 aaKnown RBP16.02■□□□□ 0.16
UPF3A-210ENST00000493727 DLEC1Q9Y238 1755 aa16.02■□□□□ 0.15
UPF3A-210ENST00000493727 NRXN2Q9P2S2 1712 aa16.02■□□□□ 0.15
UPF3A-210ENST00000493727 CRKLP46109 303 aaKnown RBP16.01■□□□□ 0.15
UPF3A-210ENST00000493727 PTGDRQ13258 359 aa16.01■□□□□ 0.15
UPF3A-210ENST00000493727 SLC4A5Q9BY07 1137 aa16.01■□□□□ 0.15
UPF3A-210ENST00000493727 SRP68Q9UHB9 627 aaKnown RBP16.01■□□□□ 0.15
UPF3A-210ENST00000493727 MRC1P22897 1456 aa16■□□□□ 0.15
UPF3A-210ENST00000493727 GPR37O15354 613 aa16■□□□□ 0.15
UPF3A-210ENST00000493727 U2AF1L5P0DN76 240 aaPredicted RBP16■□□□□ 0.15
UPF3A-210ENST00000493727 U2AF1Q01081 240 aaKnown RBP eCLIP16■□□□□ 0.15
UPF3A-210ENST00000493727 JMYQ8N9B5 988 aa16■□□□□ 0.15
UPF3A-210ENST00000493727 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
UPF3A-210ENST00000493727 SLC52A2Q9HAB3 445 aa16■□□□□ 0.15
UPF3A-210ENST00000493727 PIM2Q9P1W9 311 aa16■□□□□ 0.15
UPF3A-210ENST00000493727 FSTL1Q12841 308 aa15.99■□□□□ 0.15
UPF3A-210ENST00000493727 KLRG1Q96E93 195 aa15.99■□□□□ 0.15
UPF3A-210ENST00000493727 POLRMTO00411 1230 aaKnown RBP15.98■□□□□ 0.15
UPF3A-210ENST00000493727 RNMTO43148 476 aaKnown RBP15.98■□□□□ 0.15
UPF3A-210ENST00000493727 HMOX1P09601 288 aa15.98■□□□□ 0.15
UPF3A-210ENST00000493727 HTRA3P83110 453 aa15.98■□□□□ 0.15
UPF3A-210ENST00000493727 DALRD3Q5D0E6 543 aaKnown RBP15.98■□□□□ 0.15
UPF3A-210ENST00000493727 TK2O00142 265 aa15.97■□□□□ 0.15
UPF3A-210ENST00000493727 INTS5Q6P9B9 1019 aaKnown RBP15.97■□□□□ 0.15
UPF3A-210ENST00000493727 GPIHBP1Q8IV16 184 aa15.97■□□□□ 0.15
UPF3A-210ENST00000493727 RNF181Q9P0P0 153 aa15.97■□□□□ 0.15
UPF3A-210ENST00000493727 CCDC88AQ3V6T2 1871 aa15.97■□□□□ 0.15
UPF3A-210ENST00000493727 TIAM2Q8IVF5 1701 aa15.97■□□□□ 0.15
UPF3A-210ENST00000493727 KDM2BQ8NHM5 1336 aa15.96■□□□□ 0.15
UPF3A-210ENST00000493727 TM4SF1P30408 202 aa15.96■□□□□ 0.15
UPF3A-210ENST00000493727 CHRNA5P30532 468 aa15.96■□□□□ 0.15
UPF3A-210ENST00000493727 VPS9D1Q9Y2B5 631 aa15.96■□□□□ 0.15
UPF3A-210ENST00000493727 MTHFSDQ2M296 383 aaKnown RBP15.95■□□□□ 0.14
UPF3A-210ENST00000493727 PROX2Q3B8N5 592 aa15.95■□□□□ 0.14
UPF3A-210ENST00000493727 ANKRD13DQ6ZTN6 518 aa15.95■□□□□ 0.14
UPF3A-210ENST00000493727 C16orf71Q8IYS4 520 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-210ENST00000493727 LGR6Q9HBX8 967 aa15.95■□□□□ 0.14
UPF3A-210ENST00000493727 ADAMTS8Q9UP79 889 aa15.95■□□□□ 0.14
UPF3A-210ENST00000493727 UBR2Q8IWV8 1755 aa15.95■□□□□ 0.14
UPF3A-210ENST00000493727 SOS1Q07889 1333 aaPredicted RBP15.94■□□□□ 0.14
UPF3A-210ENST00000493727 ZC3H4Q9UPT8 1303 aaKnown RBP15.94■□□□□ 0.14
UPF3A-210ENST00000493727 PRSS12P56730 875 aa15.94■□□□□ 0.14
UPF3A-210ENST00000493727 ZPR1O75312 459 aa15.93■□□□□ 0.14
UPF3A-210ENST00000493727 NEFMP07197 916 aa15.93■□□□□ 0.14
UPF3A-210ENST00000493727 COL13A1Q5TAT6 717 aaPredicted RBP15.93■□□□□ 0.14
UPF3A-210ENST00000493727 ADGRD1Q6QNK2 874 aa15.93■□□□□ 0.14
UPF3A-210ENST00000493727 DNAJC10Q8IXB1 793 aa15.93■□□□□ 0.14
UPF3A-210ENST00000493727 GAS2L2Q8NHY3 880 aa15.93■□□□□ 0.14
UPF3A-210ENST00000493727 CDCA7LQ96GN5 454 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms