RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 CCDC87Q9NVE4 849 aa8.77□□□□□ -1.01
HERC4-211ENST00000492996 PASKQ96RG2 1323 aa8.77□□□□□ -1.01
HERC4-211ENST00000492996 DDX60LQ5H9U9 1706 aaKnown RBP8.77□□□□□ -1.01
HERC4-211ENST00000492996 RBM10P98175 930 aaKnown RBP8.77□□□□□ -1.01
HERC4-211ENST00000492996 PSMD1Q99460 953 aa8.77□□□□□ -1.01
HERC4-211ENST00000492996 BCL2L12Q9HB09 334 aa8.77□□□□□ -1.01
HERC4-211ENST00000492996 PRIM1P49642 420 aaKnown RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 MFAP1P55081 439 aaKnown RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 UPF2Q9HAU5 1272 aaKnown RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 ZBTB7BO15156 539 aaPredicted RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 C1QTNF8P60827 252 aa8.76□□□□□ -1.01
HERC4-211ENST00000492996 ANKRD45Q5TZF3 282 aa8.76□□□□□ -1.01
HERC4-211ENST00000492996 ZNF428Q96B54 188 aa8.76□□□□□ -1.01
HERC4-211ENST00000492996 KIF3CO14782 793 aa8.76□□□□□ -1.01
HERC4-211ENST00000492996 TRIM28Q13263 835 aaKnown RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 MTHFSDQ2M296 383 aaKnown RBP8.76□□□□□ -1.01
HERC4-211ENST00000492996 SMC5Q8IY18 1101 aa8.76□□□□□ -1.01
HERC4-211ENST00000492996 ZNF784Q8NCA9 323 aaPredicted RBP8.75□□□□□ -1.01
HERC4-211ENST00000492996 RTF1Q92541 710 aaKnown RBP8.75□□□□□ -1.01
HERC4-211ENST00000492996 SLKQ9H2G2 1235 aaPredicted RBP8.75□□□□□ -1.01
HERC4-211ENST00000492996 NLRP2Q9NX02 1062 aa8.75□□□□□ -1.01
HERC4-211ENST00000492996 TMOD3Q9NYL9 352 aa8.75□□□□□ -1.01
HERC4-211ENST00000492996 APLP1P51693 650 aa8.75□□□□□ -1.01
HERC4-211ENST00000492996 USHBP1Q8N6Y0 703 aa8.75□□□□□ -1.01
HERC4-211ENST00000492996 SPRYD3Q8NCJ5 442 aa8.75□□□□□ -1.01
HERC4-211ENST00000492996 YBX3P16989 372 aaKnown RBP eCLIP8.74□□□□□ -1.01
HERC4-211ENST00000492996 HSP90AA2PQ14568 343 aaPredicted RBP8.74□□□□□ -1.01
HERC4-211ENST00000492996 DNAJC5GQ8N7S2 189 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 APBB1O00213 710 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 CHL1O00533 1208 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 ARHGAP45Q92619 1136 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 BRIP1Q9BX63 1249 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 API5Q9BZZ5 524 aaKnown RBP8.74□□□□□ -1.01
HERC4-211ENST00000492996 TSPYL4Q9UJ04 414 aa8.74□□□□□ -1.01
HERC4-211ENST00000492996 COL2A1P02458 1487 aaPredicted RBP8.74□□□□□ -1.01
HERC4-211ENST00000492996 DCAF8L1A6NGE4 600 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 PDIA4P13667 645 aaKnown RBP8.73□□□□□ -1.01
HERC4-211ENST00000492996 NFKBIBQ15653 356 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 CHD1LQ86WJ1 897 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 COL4A5P29400 1685 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 CAMTA2O94983 1202 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 SLC4A2P04920 1241 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 BRPF1P55201 1214 aaPredicted RBP8.73□□□□□ -1.01
HERC4-211ENST00000492996 SLC4A10Q6U841 1118 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 C15orf52Q6ZUT6 534 aaKnown RBP8.73□□□□□ -1.01
HERC4-211ENST00000492996 SIRT2Q8IXJ6 389 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 ZNF236Q9UL36 1845 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 FGD1P98174 961 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 NUCB1Q02818 461 aa8.73□□□□□ -1.01
HERC4-211ENST00000492996 ABCC4O15439 1325 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 REM2Q8IYK8 340 aaPredicted RBP8.72□□□□□ -1.01
HERC4-211ENST00000492996 CHMP4AQ9BY43 222 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 DOCK2Q92608 1830 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 F6X3S4 739 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 TBC1D32Q96NH3 1257 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 G2E3Q7L622 706 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 CRAMP1Q96RY5 1269 aa8.72□□□□□ -1.01
HERC4-211ENST00000492996 CCDC9Q9Y3X0 531 aaKnown RBP8.72□□□□□ -1.01
HERC4-211ENST00000492996 FKBP1AP62942 108 aaKnown RBP8.71□□□□□ -1.01
HERC4-211ENST00000492996 BECN1Q14457 450 aa8.71□□□□□ -1.01
HERC4-211ENST00000492996 OTOFQ9HC10 1997 aa8.71□□□□□ -1.02
HERC4-211ENST00000492996 FRAT2O75474 233 aaPredicted RBP8.71□□□□□ -1.02
HERC4-211ENST00000492996 C22orf23Q9BZE7 217 aa8.71□□□□□ -1.02
HERC4-211ENST00000492996 CHMP4BQ9H444 224 aaKnown RBP8.71□□□□□ -1.02
HERC4-211ENST00000492996 A0A0G2JMZ2 1700 aa8.71□□□□□ -1.02
HERC4-211ENST00000492996 NAP1L5Q96NT1 182 aaPredicted RBP8.7□□□□□ -1.02
HERC4-211ENST00000492996 MEIS3Q99687 375 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 RTCBQ9Y3I0 505 aaKnown RBP8.7□□□□□ -1.02
HERC4-211ENST00000492996 CSB-PGBD3P0DP91 1061 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 HSPA6P17066 643 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 DDR1Q08345 913 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 TRAPPC3LQ5T215 181 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 ZNF34Q8IZ26 560 aa8.7□□□□□ -1.02
HERC4-211ENST00000492996 ARHGEF1Q92888 912 aaKnown RBP8.7□□□□□ -1.02
HERC4-211ENST00000492996 GNAT3A8MTJ3 354 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 RGS19P49795 217 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 GCC1Q96CN9 775 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 TBC1D2Q9BYX2 928 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 YY1P25490 414 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 CRKLP46109 303 aaKnown RBP8.69□□□□□ -1.02
HERC4-211ENST00000492996 AMIGO3Q86WK7 504 aa8.69□□□□□ -1.02
HERC4-211ENST00000492996 C16orf71Q8IYS4 520 aaPredicted RBP8.69□□□□□ -1.02
HERC4-211ENST00000492996 SPEF2Q9C093 1822 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 FZD9O00144 591 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 SMARCA5O60264 1052 aaPredicted RBP8.68□□□□□ -1.02
HERC4-211ENST00000492996 IL17REQ8NFR9 667 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 USP35Q9P2H5 1018 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 IRS2Q9Y4H2 1338 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 PHIPQ8WWQ0 1821 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 PDE6BP35913 854 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 INTS3Q68E01 1043 aaKnown RBP8.68□□□□□ -1.02
HERC4-211ENST00000492996 PLA2G12BQ9BX93 195 aa8.68□□□□□ -1.02
HERC4-211ENST00000492996 HSP90AA1P07900 732 aaKnown RBP8.67□□□□□ -1.02
HERC4-211ENST00000492996 ZNF496Q96IT1 587 aaPredicted RBP8.67□□□□□ -1.02
HERC4-211ENST00000492996 STK31Q9BXU1 1019 aa8.67□□□□□ -1.02
HERC4-211ENST00000492996 PRDM10Q9NQV6 1147 aa8.67□□□□□ -1.02
HERC4-211ENST00000492996 TAOK2Q9UL54 1235 aa8.67□□□□□ -1.02
HERC4-211ENST00000492996 FKBP5Q13451 457 aaPredicted RBP8.67□□□□□ -1.02
HERC4-211ENST00000492996 GSE1Q14687 1217 aa8.67□□□□□ -1.02
HERC4-211ENST00000492996 OTUD7AQ8TE49 926 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms