RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 MAP2K1Q02750 393 aaPredicted RBP17.49■□□□□ 0.39
HDAC3-213ENST00000492506 FMR1Q06787 632 aaKnown RBP eCLIP17.49■□□□□ 0.39
HDAC3-213ENST00000492506 DCTN1Q14203 1278 aa17.48■□□□□ 0.39
HDAC3-213ENST00000492506 JDP2Q8WYK2 163 aa17.48■□□□□ 0.39
HDAC3-213ENST00000492506 ABT1Q9ULW3 272 aaKnown RBP17.48■□□□□ 0.39
HDAC3-213ENST00000492506 SLC34A2O95436 690 aa17.47■□□□□ 0.39
HDAC3-213ENST00000492506 HOXA10P31260 410 aaPredicted RBP17.47■□□□□ 0.39
HDAC3-213ENST00000492506 SCNN1DP51172 638 aa17.47■□□□□ 0.39
HDAC3-213ENST00000492506 SLC51AQ86UW1 340 aa17.47■□□□□ 0.39
HDAC3-213ENST00000492506 NUTM1Q86Y26 1132 aa17.47■□□□□ 0.39
HDAC3-213ENST00000492506 RIC1Q4ADV7 1423 aa17.47■□□□□ 0.39
HDAC3-213ENST00000492506 EPS15P42566 896 aa17.46■□□□□ 0.39
HDAC3-213ENST00000492506 CC2D2BQ6DHV5 1058 aa17.46■□□□□ 0.39
HDAC3-213ENST00000492506 RTF1Q92541 710 aaKnown RBP17.46■□□□□ 0.39
HDAC3-213ENST00000492506 GJA3Q9Y6H8 435 aa17.46■□□□□ 0.39
HDAC3-213ENST00000492506 HTATSF1O43719 755 aaKnown RBP17.45■□□□□ 0.38
HDAC3-213ENST00000492506 GTF2E1P29083 439 aaPredicted RBP17.45■□□□□ 0.38
HDAC3-213ENST00000492506 EIF6P56537 245 aaKnown RBP17.45■□□□□ 0.38
HDAC3-213ENST00000492506 CST9Q5W186 159 aa17.45■□□□□ 0.38
HDAC3-213ENST00000492506 CAPNS2Q96L46 248 aa17.45■□□□□ 0.38
HDAC3-213ENST00000492506 ERVV-1B6SEH8 477 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 TAF7Q15545 349 aaPredicted RBP17.44■□□□□ 0.38
HDAC3-213ENST00000492506 FAM161AQ3B820 660 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 NYXQ9GZU5 481 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 MIS18AQ9NYP9 233 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 UBN2Q6ZU65 1347 aa17.44■□□□□ 0.38
HDAC3-213ENST00000492506 IBTKQ9P2D0 1353 aaPredicted RBP17.43■□□□□ 0.38
HDAC3-213ENST00000492506 TRAF5O00463 557 aa17.43■□□□□ 0.38
HDAC3-213ENST00000492506 U2AF1L5P0DN76 240 aaPredicted RBP17.43■□□□□ 0.38
HDAC3-213ENST00000492506 LMOD1P29536 600 aaPredicted RBP17.43■□□□□ 0.38
HDAC3-213ENST00000492506 U2AF1Q01081 240 aaKnown RBP eCLIP17.43■□□□□ 0.38
HDAC3-213ENST00000492506 CYP4F22Q6NT55 531 aa17.43■□□□□ 0.38
HDAC3-213ENST00000492506 MAP3K15Q6ZN16 1313 aa17.43■□□□□ 0.38
HDAC3-213ENST00000492506 CASP8AP2Q9UKL3 1982 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 GRIPAP1Q4V328 841 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 TTLL7Q6ZT98 887 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 USP50Q70EL3 339 aaPredicted RBP17.42■□□□□ 0.38
HDAC3-213ENST00000492506 LARGE2Q8N3Y3 721 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 NUDCQ9Y266 331 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 LAMB2P55268 1798 aa17.42■□□□□ 0.38
HDAC3-213ENST00000492506 TNRC18O15417 2968 aaPredicted RBP17.42■□□□□ 0.38
HDAC3-213ENST00000492506 PRKCSHP14314 528 aaPredicted RBP17.41■□□□□ 0.38
HDAC3-213ENST00000492506 ECE1P42892 770 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 RGS19P49795 217 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 SUSD4Q5VX71 490 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 C3orf67Q6ZVT6 689 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 NGEFQ8N5V2 710 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 RPGRQ92834 1020 aaKnown RBP17.41■□□□□ 0.38
HDAC3-213ENST00000492506 GPR101Q96P66 508 aaPredicted RBP17.41■□□□□ 0.38
HDAC3-213ENST00000492506 CRAMP1Q96RY5 1269 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 TLL2Q9Y6L7 1015 aa17.41■□□□□ 0.38
HDAC3-213ENST00000492506 GPTP24298 496 aa17.4■□□□□ 0.38
HDAC3-213ENST00000492506 PPP2R1AP30153 589 aa17.4■□□□□ 0.38
HDAC3-213ENST00000492506 ZNF34Q8IZ26 560 aa17.4■□□□□ 0.38
HDAC3-213ENST00000492506 ANKRD36CQ5JPF3 1778 aa17.39■□□□□ 0.37
HDAC3-213ENST00000492506 PPEF1O14829 653 aaPredicted RBP17.39■□□□□ 0.37
HDAC3-213ENST00000492506 NTSR2O95665 410 aa17.39■□□□□ 0.37
HDAC3-213ENST00000492506 GPRC5DQ9NZD1 345 aa17.39■□□□□ 0.37
HDAC3-213ENST00000492506 TCERG1O14776 1098 aaKnown RBP17.38■□□□□ 0.37
HDAC3-213ENST00000492506 AOC2O75106 756 aa17.38■□□□□ 0.37
HDAC3-213ENST00000492506 RBM17Q96I25 401 aaKnown RBP17.38■□□□□ 0.37
HDAC3-213ENST00000492506 ZBTB3Q9H5J0 574 aa17.38■□□□□ 0.37
HDAC3-213ENST00000492506 RRP7AQ9Y3A4 280 aaKnown RBP17.38■□□□□ 0.37
HDAC3-213ENST00000492506 TAF1P21675 1872 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 CCDC85CA6NKD9 419 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 MAP2K2P36507 400 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 EIF4A1P60842 406 aaKnown RBP17.37■□□□□ 0.37
HDAC3-213ENST00000492506 GRM1Q13255 1194 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 KIF6Q6ZMV9 814 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 PAXIP1Q6ZW49 1069 aaPredicted RBP17.37■□□□□ 0.37
HDAC3-213ENST00000492506 SAPCD2Q86UD0 394 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 NIM1KQ8IY84 436 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 ADARB2Q9NS39 739 aaKnown RBP17.37■□□□□ 0.37
HDAC3-213ENST00000492506 TSKSQ9UJT2 592 aa17.37■□□□□ 0.37
HDAC3-213ENST00000492506 PPIP5K2O43314 1243 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 MYL6BP14649 208 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 CXCL9Q07325 125 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 AOC3Q16853 763 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 BEGAINQ9BUH8 593 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 VPS33BQ9H267 617 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 PGAP2Q9UHJ9 254 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 ATP6V0A2Q9Y487 856 aa17.36■□□□□ 0.37
HDAC3-213ENST00000492506 POLR2AP24928 1970 aaKnown RBP17.35■□□□□ 0.37
HDAC3-213ENST00000492506 MLLT1Q03111 559 aaPredicted RBP17.35■□□□□ 0.37
HDAC3-213ENST00000492506 GIGYF2Q6Y7W6 1299 aaKnown RBP17.35■□□□□ 0.37
HDAC3-213ENST00000492506 PNISRQ8TF01 805 aaKnown RBP17.35■□□□□ 0.37
HDAC3-213ENST00000492506 RTFDC1Q9BY42 306 aaPredicted RBP17.35■□□□□ 0.37
HDAC3-213ENST00000492506 SLC10A5Q5PT55 438 aa17.34■□□□□ 0.37
HDAC3-213ENST00000492506 LRP10Q7Z4F1 713 aa17.34■□□□□ 0.37
HDAC3-213ENST00000492506 ZNRF3Q9ULT6 936 aa17.34■□□□□ 0.37
HDAC3-213ENST00000492506 ABCC4O15439 1325 aa17.33■□□□□ 0.36
HDAC3-213ENST00000492506 CELF2O95319 508 aaKnown RBP17.33■□□□□ 0.36
HDAC3-213ENST00000492506 GMPSP49915 693 aaPredicted RBP17.33■□□□□ 0.36
HDAC3-213ENST00000492506 HIRAP54198 1017 aaPredicted RBP17.33■□□□□ 0.36
HDAC3-213ENST00000492506 HHIPL1Q96JK4 782 aa17.33■□□□□ 0.36
HDAC3-213ENST00000492506 NLRP3Q96P20 1036 aa17.33■□□□□ 0.36
HDAC3-213ENST00000492506 GLIS2Q9BZE0 524 aaPredicted RBP17.33■□□□□ 0.36
HDAC3-213ENST00000492506 ERBB4Q15303 1308 aa17.32■□□□□ 0.36
HDAC3-213ENST00000492506 PARP10Q53GL7 1025 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms