RNA–Protein interactions for RNA: ENST00000490812.5

PTPN18-215, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 5

Gene PTPN18, Length 833 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-215	ENST00000490812	HSPA6	P17066	643 aa		27.68	■■■□□ 2.02
PTPN18-215	ENST00000490812	DBF4	Q9UBU7	674 aa	Predicted RBP	27.68	■■■□□ 2.02
PTPN18-215	ENST00000490812	ANP32C	O43423	234 aa		27.67	■■■□□ 2.02
PTPN18-215	ENST00000490812	AIMP1	Q12904	312 aa	Known RBP	27.67	■■■□□ 2.02
PTPN18-215	ENST00000490812	DUSP27	Q5VZP5	1158 aa		27.67	■■■□□ 2.02
PTPN18-215	ENST00000490812	C16orf71	Q8IYS4	520 aa	Predicted RBP	27.67	■■■□□ 2.02
PTPN18-215	ENST00000490812	HOXA10	P31260	410 aa	Predicted RBP	27.66	■■■□□ 2.02
PTPN18-215	ENST00000490812	RBM46	Q8TBY0	533 aa	Known RBP	27.65	■■■□□ 2.02
PTPN18-215	ENST00000490812	UTP14A	Q9BVJ6	771 aa	Known RBP	27.65	■■■□□ 2.02
PTPN18-215	ENST00000490812	RRAGC	Q9HB90	399 aa		27.65	■■■□□ 2.02
PTPN18-215	ENST00000490812	RTKN2	Q8IZC4	609 aa		27.64	■■■□□ 2.02
PTPN18-215	ENST00000490812	RPGR	Q92834	1020 aa	Known RBP	27.64	■■■□□ 2.02
PTPN18-215	ENST00000490812	CEP350	Q5VT06	3117 aa		27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	FKBP4	Q02790	459 aa	Known RBP eCLIP	27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	TCIRG1	Q13488	830 aa		27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	SLC10A5	Q5PT55	438 aa		27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	DPY19L2	Q6NUT2	758 aa		27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	HYPK	Q9NX55	129 aa		27.63	■■■□□ 2.01
PTPN18-215	ENST00000490812	CCDC27	Q2M243	656 aa		27.62	■■■□□ 2.01
PTPN18-215	ENST00000490812	NLRP10	Q86W26	655 aa		27.62	■■■□□ 2.01
PTPN18-215	ENST00000490812	PLBD2	Q8NHP8	589 aa		27.62	■■■□□ 2.01
PTPN18-215	ENST00000490812	MRS2	Q9HD23	443 aa		27.62	■■■□□ 2.01
PTPN18-215	ENST00000490812	WDR90	Q96KV7	1748 aa		27.61	■■■□□ 2.01
PTPN18-215	ENST00000490812	CC2D2B	Q6DHV5	1058 aa		27.61	■■■□□ 2.01
PTPN18-215	ENST00000490812	NLRP3	Q96P20	1036 aa		27.61	■■■□□ 2.01
PTPN18-215	ENST00000490812	CRAMP1	Q96RY5	1269 aa		27.61	■■■□□ 2.01
PTPN18-215	ENST00000490812	VEGFA	P15692	232 aa	Predicted RBP	27.6	■■■□□ 2.01
PTPN18-215	ENST00000490812	RBM17	Q96I25	401 aa	Known RBP	27.6	■■■□□ 2.01
PTPN18-215	ENST00000490812	SNED1	Q8TER0	1413 aa		27.59	■■■□□ 2.01
PTPN18-215	ENST00000490812	FSTL1	Q12841	308 aa		27.59	■■■□□ 2.01
PTPN18-215	ENST00000490812	NCBP3	Q53F19	620 aa	Known RBP	27.59	■■■□□ 2.01
PTPN18-215	ENST00000490812	ANKRD13D	Q6ZTN6	518 aa		27.59	■■■□□ 2.01
PTPN18-215	ENST00000490812	CHMP4A	Q9BY43	222 aa		27.59	■■■□□ 2.01
PTPN18-215	ENST00000490812	GRIPAP1	Q4V328	841 aa		27.58	■■■□□ 2.01
PTPN18-215	ENST00000490812	OLFM4	Q6UX06	510 aa		27.58	■■■□□ 2.01
PTPN18-215	ENST00000490812	C3orf67	Q6ZVT6	689 aa		27.57	■■■□□ 2
PTPN18-215	ENST00000490812	LAMB2	P55268	1798 aa		27.56	■■■□□ 2
PTPN18-215	ENST00000490812	PSMD1	Q99460	953 aa		27.56	■■■□□ 2
PTPN18-215	ENST00000490812	TRMT112	Q9UI30	125 aa	Known RBP	27.56	■■■□□ 2
PTPN18-215	ENST00000490812	SH3TC1	Q8TE82	1336 aa		27.56	■■■□□ 2
PTPN18-215	ENST00000490812	APLP1	P51693	650 aa		27.55	■■■□□ 2
PTPN18-215	ENST00000490812	WWC1	Q8IX03	1113 aa		27.55	■■■□□ 2
PTPN18-215	ENST00000490812	ELL2	O00472	640 aa	Predicted RBP	27.54	■■■□□ 2
PTPN18-215	ENST00000490812	C8orf58	Q8NAV2	365 aa		27.54	■■■□□ 2
PTPN18-215	ENST00000490812	ISCA1	Q9BUE6	129 aa		27.54	■■■□□ 2
PTPN18-215	ENST00000490812	ZNF277	Q9NRM2	450 aa	Predicted RBP	27.54	■■■□□ 2
PTPN18-215	ENST00000490812	PPEF1	O14829	653 aa	Predicted RBP	27.53	■■■□□ 2
PTPN18-215	ENST00000490812	SYNE4	Q8N205	404 aa		27.53	■■■□□ 2
PTPN18-215	ENST00000490812	SMC1B	Q8NDV3	1235 aa		27.53	■■■□□ 2
PTPN18-215	ENST00000490812	IL16	Q14005	1332 aa		27.52	■■■□□ 2
PTPN18-215	ENST00000490812	IARS	P41252	1262 aa	Known RBP	27.52	■■■□□ 2
PTPN18-215	ENST00000490812	GOLGA2	Q08379	1002 aa		27.52	■■■□□ 2
PTPN18-215	ENST00000490812	POTEC	B2RU33	542 aa		27.51	■■□□□ 1.99
PTPN18-215	ENST00000490812	TRIM28	Q13263	835 aa	Known RBP	27.51	■■□□□ 1.99
PTPN18-215	ENST00000490812	CCDC30	Q5VVM6	783 aa		27.51	■■□□□ 1.99
PTPN18-215	ENST00000490812	HCLS1	P14317	486 aa	Predicted RBP	27.5	■■□□□ 1.99
PTPN18-215	ENST00000490812	TMX4	Q9H1E5	349 aa	Predicted RBP	27.5	■■□□□ 1.99
PTPN18-215	ENST00000490812	DDX60	Q8IY21	1712 aa	Known RBP	27.5	■■□□□ 1.99
PTPN18-215	ENST00000490812	ABCC4	O15439	1325 aa		27.49	■■□□□ 1.99
PTPN18-215	ENST00000490812	DDN	O94850	711 aa	Predicted RBP	27.49	■■□□□ 1.99
PTPN18-215	ENST00000490812	RIC3	Q7Z5B4	369 aa		27.49	■■□□□ 1.99
PTPN18-215	ENST00000490812	PHAX	Q9H814	394 aa	Known RBP	27.49	■■□□□ 1.99
PTPN18-215	ENST00000490812	TSR2	Q969E8	191 aa	Known RBP	27.48	■■□□□ 1.99
PTPN18-215	ENST00000490812	ATP6V0A2	Q9Y487	856 aa		27.48	■■□□□ 1.99
PTPN18-215	ENST00000490812	SCN4A	P35499	1836 aa		27.48	■■□□□ 1.99
PTPN18-215	ENST00000490812	ATP5J2-PTCD1	G3V325	749 aa		27.47	■■□□□ 1.99
PTPN18-215	ENST00000490812	BBOX1	O75936	387 aa		27.47	■■□□□ 1.99
PTPN18-215	ENST00000490812	L3MBTL3	Q96JM7	780 aa	Predicted RBP	27.47	■■□□□ 1.99
PTPN18-215	ENST00000490812	DDX46	Q7L014	1031 aa	Known RBP	27.46	■■□□□ 1.99
PTPN18-215	ENST00000490812	TSPYL6	Q8N831	410 aa		27.46	■■□□□ 1.99
PTPN18-215	ENST00000490812	JDP2	Q8WYK2	163 aa		27.46	■■□□□ 1.99
PTPN18-215	ENST00000490812	IQCA1L	A6NCM1	817 aa		27.45	■■□□□ 1.98
PTPN18-215	ENST00000490812	FZD9	O00144	591 aa		27.45	■■□□□ 1.98
PTPN18-215	ENST00000490812	DDX58	O95786	925 aa	Known RBP	27.45	■■□□□ 1.98
PTPN18-215	ENST00000490812	FAM89A	Q96GI7	184 aa		27.45	■■□□□ 1.98
PTPN18-215	ENST00000490812	ZNF541	Q9H0D2	1346 aa		27.44	■■□□□ 1.98
PTPN18-215	ENST00000490812	TCERG1	O14776	1098 aa	Known RBP	27.44	■■□□□ 1.98
PTPN18-215	ENST00000490812	GRAP	Q13588	217 aa		27.44	■■□□□ 1.98
PTPN18-215	ENST00000490812	GRAPL	Q8TC17	118 aa	Predicted RBP	27.44	■■□□□ 1.98
PTPN18-215	ENST00000490812	SP8	Q8IXZ3	490 aa		27.43	■■□□□ 1.98
PTPN18-215	ENST00000490812	VPS33B	Q9H267	617 aa		27.43	■■□□□ 1.98
PTPN18-215	ENST00000490812	SF3B3	Q15393	1217 aa	Known RBP	27.42	■■□□□ 1.98
PTPN18-215	ENST00000490812	TWISTNB	Q3B726	338 aa	Predicted RBP	27.42	■■□□□ 1.98
PTPN18-215	ENST00000490812	TMC4	Q7Z404	712 aa		27.42	■■□□□ 1.98
PTPN18-215	ENST00000490812	WDR63	Q8IWG1	891 aa		27.42	■■□□□ 1.98
PTPN18-215	ENST00000490812	STK31	Q9BXU1	1019 aa		27.42	■■□□□ 1.98
PTPN18-215	ENST00000490812	COL4A5	P29400	1685 aa		27.41	■■□□□ 1.98
PTPN18-215	ENST00000490812	SLC51A	Q86UW1	340 aa		27.41	■■□□□ 1.98
PTPN18-215	ENST00000490812	CCDC191	Q8NCU4	936 aa		27.41	■■□□□ 1.98
PTPN18-215	ENST00000490812	SUPT20H	Q8NEM7	779 aa		27.41	■■□□□ 1.98
PTPN18-215	ENST00000490812	HSP90B1	P14625	803 aa	Known RBP	27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	GPC2	Q8N158	579 aa		27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	LARGE2	Q8N3Y3	721 aa		27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	ZNF428	Q96B54	188 aa		27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	MYD88	Q99836	296 aa		27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	METTL22	Q9BUU2	404 aa	Predicted RBP	27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	RTFDC1	Q9BY42	306 aa	Predicted RBP	27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	LRRC37A	A6NMS7	1700 aa		27.4	■■□□□ 1.98
PTPN18-215	ENST00000490812	TAF1	P21675	1872 aa		27.4	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms