RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 PI4KAP1Q8N8J0 262 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 MEIS3Q99687 375 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 C1orf115Q9H7X2 142 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 UPF2Q9HAU5 1272 aaKnown RBP12.73□□□□□ -0.37
HDAC3-210ENST00000490808 CEP350Q5VT06 3117 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 BCORQ6W2J9 1755 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 SCN7AQ01118 1682 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 GRIN3BO60391 1043 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 PHF14O94880 888 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 A1BGP04217 495 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 HSP90AB4PQ58FF6 505 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 NLGN2Q8NFZ4 835 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 LINS1Q8NG48 757 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 NUP98P52948 1817 aa12.72□□□□□ -0.37
HDAC3-210ENST00000490808 BEND3Q5T5X7 828 aa12.71□□□□□ -0.37
HDAC3-210ENST00000490808 KIF6Q6ZMV9 814 aa12.71□□□□□ -0.37
HDAC3-210ENST00000490808 C9orf78Q9NZ63 289 aaPredicted RBP12.71□□□□□ -0.37
HDAC3-210ENST00000490808 MAP3K2Q9Y2U5 619 aa12.71□□□□□ -0.37
HDAC3-210ENST00000490808 GYS1P13807 737 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 HSPA6P17066 643 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 HSP90AB3PQ58FF7 597 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 ANKRD13DQ6ZTN6 518 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 DZIP3Q86Y13 1208 aaKnown RBP12.7□□□□□ -0.38
HDAC3-210ENST00000490808 DDRGK1Q96HY6 314 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 USP44Q9H0E7 712 aa12.7□□□□□ -0.38
HDAC3-210ENST00000490808 GPBP1L1Q9HC44 474 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-210ENST00000490808 PRAMEF22A3QJZ6 481 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 NBPF26B4DH59 902 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 MYL6BP14649 208 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 YBX3P16989 372 aaKnown RBP eCLIP12.69□□□□□ -0.38
HDAC3-210ENST00000490808 AIMP1Q12904 312 aaKnown RBP12.69□□□□□ -0.38
HDAC3-210ENST00000490808 NBPF10Q6P3W6 841 aaKnown RBP12.69□□□□□ -0.38
HDAC3-210ENST00000490808 SIRT2Q8IXJ6 389 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 NBPF15Q8N660 670 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 GOLGB1Q14789 3259 aaKnown RBP12.69□□□□□ -0.38
HDAC3-210ENST00000490808 ADCY9O60503 1353 aa12.69□□□□□ -0.38
HDAC3-210ENST00000490808 MAP3K15Q6ZN16 1313 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 RAB11FIP3O75154 756 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 PDIA6Q15084 440 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 COPS6Q7L5N1 327 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 AMIGO3Q86WK7 504 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 XAGE3Q8WTP9 111 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 LNPKQ9C0E8 428 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 PARP3Q9Y6F1 533 aa12.68□□□□□ -0.38
HDAC3-210ENST00000490808 KIF13BQ9NQT8 1826 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 CAMTA2O94983 1202 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 ANXA1P04083 346 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 C8orf34Q49A92 452 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 LRP10Q7Z4F1 713 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 PLBD2Q8NHP8 589 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 ZNF526Q8TF50 670 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-210ENST00000490808 METTL22Q9BUU2 404 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-210ENST00000490808 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-210ENST00000490808 LRRFIP2Q9Y608 721 aaKnown RBP12.67□□□□□ -0.38
HDAC3-210ENST00000490808 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
HDAC3-210ENST00000490808 ANKRD36CQ5JPF3 1778 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 NRXN2Q9P2S2 1712 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 TM4SF1P30408 202 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 PROSER3Q2NL68 480 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 BMP2KLQ5H9B9 411 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 GIGYF2Q6Y7W6 1299 aaKnown RBP12.66□□□□□ -0.38
HDAC3-210ENST00000490808 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 LRRCC1Q9C099 1032 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 CD2APQ9Y5K6 639 aa12.66□□□□□ -0.38
HDAC3-210ENST00000490808 GRM8O00222 908 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 PARP10Q53GL7 1025 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 CASC1Q6TDU7 716 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 SKAP1Q86WV1 359 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 ERC1Q8IUD2 1116 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 SSH3Q8TE77 659 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 NYXQ9GZU5 481 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 DAXXQ9UER7 740 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-210ENST00000490808 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
HDAC3-210ENST00000490808 AFDNP55196 1824 aaKnown RBP12.65□□□□□ -0.39
HDAC3-210ENST00000490808 UTYO14607 1347 aa12.64□□□□□ -0.39
HDAC3-210ENST00000490808 MMP10P09238 476 aa12.64□□□□□ -0.39
HDAC3-210ENST00000490808 HSP90B1P14625 803 aaKnown RBP12.64□□□□□ -0.39
HDAC3-210ENST00000490808 ERICH6Q7L0X2 663 aa12.64□□□□□ -0.39
HDAC3-210ENST00000490808 SRGAP3O43295 1099 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 TRIM28Q13263 835 aaKnown RBP12.63□□□□□ -0.39
HDAC3-210ENST00000490808 MTX1Q13505 466 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 POLA2Q14181 598 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 PPP1R42Q7Z4L9 355 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 IPO9Q96P70 1041 aaKnown RBP12.63□□□□□ -0.39
HDAC3-210ENST00000490808 MYD88Q99836 296 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 BCL2L12Q9HB09 334 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 SRP68Q9UHB9 627 aaKnown RBP12.63□□□□□ -0.39
HDAC3-210ENST00000490808 ARFGEF2Q9Y6D5 1785 aa12.63□□□□□ -0.39
HDAC3-210ENST00000490808 NEURL1BA8MQ27 555 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 POLRMTO00411 1230 aaKnown RBP12.62□□□□□ -0.39
HDAC3-210ENST00000490808 SURF6O75683 361 aaKnown RBP12.62□□□□□ -0.39
HDAC3-210ENST00000490808 TGFB2P61812 414 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 GCKRQ14397 625 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 NFIXQ14938 502 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 TPTE2Q6XPS3 522 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 KIF1BPQ96EK5 621 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 RIC1Q4ADV7 1423 aa12.62□□□□□ -0.39
HDAC3-210ENST00000490808 NBPF7P0C2Y1 421 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms