RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 TRMT112Q9UI30 125 aaKnown RBP17.2■□□□□ 0.34
CCL28-202ENST00000489442 CACNA1FO60840 1977 aa17.2■□□□□ 0.34
CCL28-202ENST00000489442 NTSR2O95665 410 aa17.19■□□□□ 0.34
CCL28-202ENST00000489442 MIER1Q8N108 512 aa17.19■□□□□ 0.34
CCL28-202ENST00000489442 SPINK5Q9NQ38 1064 aaPredicted RBP17.19■□□□□ 0.34
CCL28-202ENST00000489442 ARFGEF2Q9Y6D5 1785 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 KLRG2A4D1S0 409 aaPredicted RBP17.18■□□□□ 0.34
CCL28-202ENST00000489442 ATP5J2-PTCD1G3V325 749 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 C21orf2O43822 256 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 SLC4A2P04920 1241 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 ALDH1B1P30837 517 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 PRPF40BQ6NWY9 871 aaKnown RBP17.18■□□□□ 0.34
CCL28-202ENST00000489442 SLX4Q8IY92 1834 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 RPGRQ92834 1020 aaKnown RBP17.18■□□□□ 0.34
CCL28-202ENST00000489442 ABCC12Q96J65 1359 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 NLRP3Q96P20 1036 aa17.18■□□□□ 0.34
CCL28-202ENST00000489442 RNF123Q5XPI4 1314 aa17.17■□□□□ 0.34
CCL28-202ENST00000489442 ZNF428Q96B54 188 aa17.17■□□□□ 0.34
CCL28-202ENST00000489442 SBF1O95248 1867 aa17.16■□□□□ 0.34
CCL28-202ENST00000489442 CCDC88AQ3V6T2 1871 aa17.16■□□□□ 0.34
CCL28-202ENST00000489442 VAMP4O75379 141 aa17.16■□□□□ 0.34
CCL28-202ENST00000489442 C9orf131Q5VYM1 1079 aa17.16■□□□□ 0.34
CCL28-202ENST00000489442 SH3TC1Q8TE82 1336 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 CRY2Q49AN0 593 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 SLC10A5Q5PT55 438 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 SOGA3Q5TF21 947 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 MYD88Q99836 296 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 ISCA1Q9BUE6 129 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 RNF181Q9P0P0 153 aa17.15■□□□□ 0.34
CCL28-202ENST00000489442 TNRC6CQ9HCJ0 1690 aaKnown RBP17.15■□□□□ 0.34
CCL28-202ENST00000489442 ZNF521Q96K83 1311 aa17.14■□□□□ 0.33
CCL28-202ENST00000489442 HCLS1P14317 486 aaPredicted RBP17.14■□□□□ 0.33
CCL28-202ENST00000489442 RASSF7Q02833 373 aa17.14■□□□□ 0.33
CCL28-202ENST00000489442 KSR2Q6VAB6 950 aa17.14■□□□□ 0.33
CCL28-202ENST00000489442 ZNF526Q8TF50 670 aaPredicted RBP17.14■□□□□ 0.33
CCL28-202ENST00000489442 RBM17Q96I25 401 aaKnown RBP17.14■□□□□ 0.33
CCL28-202ENST00000489442 MAP3K2Q9Y2U5 619 aa17.14■□□□□ 0.33
CCL28-202ENST00000489442 RIC1Q4ADV7 1423 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 PI4KAP2A4QPH2 592 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 E9PSI1 815 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 NEXNQ0ZGT2 675 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 TRIM28Q13263 835 aaKnown RBP17.13■□□□□ 0.33
CCL28-202ENST00000489442 RTL5Q5HYW3 569 aaPredicted RBP17.13■□□□□ 0.33
CCL28-202ENST00000489442 SYNE4Q8N205 404 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 PI4KAP1Q8N8J0 262 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 FAM89AQ96GI7 184 aa17.13■□□□□ 0.33
CCL28-202ENST00000489442 METTL22Q9BUU2 404 aaPredicted RBP17.13■□□□□ 0.33
CCL28-202ENST00000489442 LMNB1P20700 586 aa17.12■□□□□ 0.33
CCL28-202ENST00000489442 FKBP5Q13451 457 aaPredicted RBP17.12■□□□□ 0.33
CCL28-202ENST00000489442 G2E3Q7L622 706 aa17.12■□□□□ 0.33
CCL28-202ENST00000489442 GPBP1L1Q9HC44 474 aaPredicted RBP17.12■□□□□ 0.33
CCL28-202ENST00000489442 FER1L6Q2WGJ9 1857 aa17.12■□□□□ 0.33
CCL28-202ENST00000489442 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
CCL28-202ENST00000489442 FLIIQ13045 1269 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 CCDC93Q567U6 631 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 CCDC191Q8NCU4 936 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 CRAMP1Q96RY5 1269 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 TMX4Q9H1E5 349 aaPredicted RBP17.11■□□□□ 0.33
CCL28-202ENST00000489442 TAOK3Q9H2K8 898 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 CWC25Q9NXE8 425 aaPredicted RBP17.11■□□□□ 0.33
CCL28-202ENST00000489442 ADCY9O60503 1353 aa17.11■□□□□ 0.33
CCL28-202ENST00000489442 NFKBIEO00221 500 aa17.1■□□□□ 0.33
CCL28-202ENST00000489442 HSP90B1P14625 803 aaKnown RBP17.1■□□□□ 0.33
CCL28-202ENST00000489442 C3orf67Q6ZVT6 689 aa17.1■□□□□ 0.33
CCL28-202ENST00000489442 LAMB2P55268 1798 aa17.09■□□□□ 0.33
CCL28-202ENST00000489442 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
CCL28-202ENST00000489442 DDX46Q7L014 1031 aaKnown RBP17.09■□□□□ 0.33
CCL28-202ENST00000489442 RTKN2Q8IZC4 609 aa17.09■□□□□ 0.33
CCL28-202ENST00000489442 ZBTB38Q8NAP3 1195 aaPredicted RBP17.09■□□□□ 0.33
CCL28-202ENST00000489442 C7orf43Q8WVR3 580 aa17.09■□□□□ 0.33
CCL28-202ENST00000489442 IRS4O14654 1257 aaPredicted RBP17.08■□□□□ 0.32
CCL28-202ENST00000489442 CDCA7LQ96GN5 454 aa17.08■□□□□ 0.32
CCL28-202ENST00000489442 PPEF1O14829 653 aaPredicted RBP17.07■□□□□ 0.32
CCL28-202ENST00000489442 CC2D2BQ6DHV5 1058 aa17.07■□□□□ 0.32
CCL28-202ENST00000489442 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
CCL28-202ENST00000489442 DDX60Q8IY21 1712 aaKnown RBP17.07■□□□□ 0.32
CCL28-202ENST00000489442 DICER1Q9UPY3 1922 aaKnown RBP17.07■□□□□ 0.32
CCL28-202ENST00000489442 LTBP3Q9NS15 1303 aa17.07■□□□□ 0.32
CCL28-202ENST00000489442 PCCAP05165 728 aaPredicted RBP17.06■□□□□ 0.32
CCL28-202ENST00000489442 DNAAF4Q8WXU2 420 aa17.06■□□□□ 0.32
CCL28-202ENST00000489442 TAF1P21675 1872 aa17.05■□□□□ 0.32
CCL28-202ENST00000489442 BBOX1O75936 387 aa17.05■□□□□ 0.32
CCL28-202ENST00000489442 FKBP4Q02790 459 aaKnown RBP eCLIP17.05■□□□□ 0.32
CCL28-202ENST00000489442 CWF19L2Q2TBE0 894 aaKnown RBP17.05■□□□□ 0.32
CCL28-202ENST00000489442 GRIPAP1Q4V328 841 aa17.05■□□□□ 0.32
CCL28-202ENST00000489442 JARID2Q92833 1246 aaPredicted RBP17.05■□□□□ 0.32
CCL28-202ENST00000489442 ABCC4O15439 1325 aa17.05■□□□□ 0.32
CCL28-202ENST00000489442 KDM2BQ8NHM5 1336 aa17.05■□□□□ 0.32
CCL28-202ENST00000489442 IGKV5-2P06315 115 aa17.04■□□□□ 0.32
CCL28-202ENST00000489442 PRELPP51888 382 aa17.04■□□□□ 0.32
CCL28-202ENST00000489442 ZC3H4Q9UPT8 1303 aaKnown RBP17.04■□□□□ 0.32
CCL28-202ENST00000489442 TIAM2Q8IVF5 1701 aa17.03■□□□□ 0.32
CCL28-202ENST00000489442 NEURL1BA8MQ27 555 aa17.03■□□□□ 0.32
CCL28-202ENST00000489442 PDE8AO60658 829 aa17.03■□□□□ 0.32
CCL28-202ENST00000489442 HNRNPUQ00839 825 aaKnown RBP eCLIP17.03■□□□□ 0.32
CCL28-202ENST00000489442 GRAPQ13588 217 aa17.03■□□□□ 0.32
CCL28-202ENST00000489442 SF3B3Q15393 1217 aaKnown RBP17.03■□□□□ 0.32
CCL28-202ENST00000489442 GRAPLQ8TC17 118 aaPredicted RBP17.03■□□□□ 0.32
CCL28-202ENST00000489442 ZNF277Q9NRM2 450 aaPredicted RBP17.03■□□□□ 0.32
CCL28-202ENST00000489442 DPY19L2Q6NUT2 758 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms