RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 FAM196BA6NMK8 535 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L15C9J2P7 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L10C9JJH3 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L13C9JLJ4 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L12C9JPN9 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L11C9JVI0 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L21D6R901 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L18D6R9N7 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L22D6RA61 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L17D6RBQ6 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L19D6RCP7 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L20D6RJB6 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 USP17L24Q0WX57 530 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 PTK7Q13308 1070 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 CDCA8Q53HL2 280 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 ZNF280CQ8ND82 737 aa7.75□□□□□ -1.17
XRN1-213ENST00000489241 ADAM23O75077 832 aa7.74□□□□□ -1.17
XRN1-213ENST00000489241 SRPK2P78362 688 aaKnown RBP7.74□□□□□ -1.17
XRN1-213ENST00000489241 DPYDQ12882 1025 aa7.74□□□□□ -1.17
XRN1-213ENST00000489241 CHMP7Q8WUX9 453 aaPredicted RBP7.74□□□□□ -1.17
XRN1-213ENST00000489241 TRIM11Q96F44 468 aa7.74□□□□□ -1.17
XRN1-213ENST00000489241 TRAIPQ9BWF2 469 aa7.74□□□□□ -1.17
XRN1-213ENST00000489241 KCNH4Q9UQ05 1017 aa7.74□□□□□ -1.17
XRN1-213ENST00000489241 ZBTB7CA1YPR0 619 aa7.73□□□□□ -1.17
XRN1-213ENST00000489241 IGFBP4P22692 258 aa7.73□□□□□ -1.17
XRN1-213ENST00000489241 PDE4CQ08493 712 aa7.73□□□□□ -1.17
XRN1-213ENST00000489241 RAB44Q7Z6P3 723 aaPredicted RBP7.73□□□□□ -1.17
XRN1-213ENST00000489241 ANKMY2Q8IV38 441 aa7.73□□□□□ -1.17
XRN1-213ENST00000489241 NGLY1Q96IV0 654 aa7.73□□□□□ -1.17
XRN1-213ENST00000489241 C1QTNF9BB2RNN3 333 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 ATG7O95352 703 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 ADH7P40394 386 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 BAG6P46379 1132 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 RTN1Q16799 776 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 IER5Q5VY09 327 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 BTLAQ7Z6A9 289 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 HINFPQ9BQA5 517 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 PLVAPQ9BX97 442 aa7.72□□□□□ -1.17
XRN1-213ENST00000489241 SPDYE3A6NKU9 549 aa7.71□□□□□ -1.18
XRN1-213ENST00000489241 SPATA31C1P0DKV0 1188 aa7.71□□□□□ -1.18
XRN1-213ENST00000489241 CHRNA4P43681 627 aa7.71□□□□□ -1.18
XRN1-213ENST00000489241 ELOAQ14241 798 aaKnown RBP7.71□□□□□ -1.18
XRN1-213ENST00000489241 CD163Q86VB7 1156 aa7.71□□□□□ -1.18
XRN1-213ENST00000489241 PRDM6Q9NQX0 595 aa7.71□□□□□ -1.18
XRN1-213ENST00000489241 TGFBR3LH3BV60 316 aa7.7□□□□□ -1.18
XRN1-213ENST00000489241 M0R082 166 aa7.7□□□□□ -1.18
XRN1-213ENST00000489241 RETREG2Q8NC44 543 aa7.7□□□□□ -1.18
XRN1-213ENST00000489241 ZNF417Q8TAU3 575 aa7.7□□□□□ -1.18
XRN1-213ENST00000489241 ZNF587Q96SQ5 575 aaPredicted RBP7.7□□□□□ -1.18
XRN1-213ENST00000489241 K7ELQ4 463 aaPredicted RBP7.69□□□□□ -1.18
XRN1-213ENST00000489241 ALBP02768 609 aa7.69□□□□□ -1.18
XRN1-213ENST00000489241 FAM200AQ8TCP9 573 aa7.69□□□□□ -1.18
XRN1-213ENST00000489241 BHMTQ93088 406 aa7.69□□□□□ -1.18
XRN1-213ENST00000489241 EFCC1Q9HA90 598 aa7.69□□□□□ -1.18
XRN1-213ENST00000489241 STARD13Q9Y3M8 1113 aa7.69□□□□□ -1.18
XRN1-213ENST00000489241 LGR5O75473 907 aa7.68□□□□□ -1.18
XRN1-213ENST00000489241 PRRT3Q5FWE3 981 aa7.68□□□□□ -1.18
XRN1-213ENST00000489241 NOVA2Q9UNW9 492 aaKnown RBP7.68□□□□□ -1.18
XRN1-213ENST00000489241 FOXO3O43524 673 aa7.67□□□□□ -1.18
XRN1-213ENST00000489241 MICALL1Q8N3F8 863 aa7.67□□□□□ -1.18
XRN1-213ENST00000489241 EPB42P16452 691 aa7.66□□□□□ -1.18
XRN1-213ENST00000489241 COL9A3Q14050 684 aaPredicted RBP7.66□□□□□ -1.18
XRN1-213ENST00000489241 UBE2OQ9C0C9 1292 aaKnown RBP7.66□□□□□ -1.18
XRN1-213ENST00000489241 BCS1LQ9Y276 419 aa7.66□□□□□ -1.18
XRN1-213ENST00000489241 FURINP09958 794 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 NID1P14543 1247 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 WEE1P30291 646 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 TBC1D8BQ0IIM8 1120 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 C20orf204Q6ZNR8 217 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 PNMA5Q96PV4 448 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 DMGDHQ9UI17 866 aaKnown RBP7.65□□□□□ -1.18
XRN1-213ENST00000489241 USTQ9Y2C2 406 aa7.65□□□□□ -1.18
XRN1-213ENST00000489241 LILRB5O75023 590 aa7.64□□□□□ -1.19
XRN1-213ENST00000489241 C8orf86Q6ZUL3 223 aa7.64□□□□□ -1.19
XRN1-213ENST00000489241 VTI1AQ96AJ9 217 aa7.64□□□□□ -1.19
XRN1-213ENST00000489241 GSX2Q9BZM3 304 aa7.64□□□□□ -1.19
XRN1-213ENST00000489241 QTRT2Q9H974 415 aaKnown RBP7.64□□□□□ -1.19
XRN1-213ENST00000489241 SLC6A14Q9UN76 642 aa7.64□□□□□ -1.19
XRN1-213ENST00000489241 NFKB1P19838 968 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 IDH3AP50213 366 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 DGKZQ13574 1117 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 CCINQ13939 588 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 AEBP1Q8IUX7 1158 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 MYO19Q96H55 970 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 KLK14Q9P0G3 267 aa7.63□□□□□ -1.19
XRN1-213ENST00000489241 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.63□□□□□ -1.19
XRN1-213ENST00000489241 FAM229AH3BQW9 127 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 APBA3O96018 575 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 INPP5BP32019 993 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 GATA4P43694 442 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 ARSDP51689 593 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 IGFLR1Q9H665 355 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 DNAJB12Q9NXW2 375 aaKnown RBP7.62□□□□□ -1.19
XRN1-213ENST00000489241 ZMIZ1Q9ULJ6 1067 aa7.62□□□□□ -1.19
XRN1-213ENST00000489241 CCDC9Q9Y3X0 531 aaKnown RBP7.62□□□□□ -1.19
XRN1-213ENST00000489241 GRNP28799 593 aaKnown RBP7.61□□□□□ -1.19
XRN1-213ENST00000489241 TRIM28Q13263 835 aaKnown RBP7.61□□□□□ -1.19
XRN1-213ENST00000489241 SWI5Q1ZZU3 235 aa7.61□□□□□ -1.19
XRN1-213ENST00000489241 TMEM164Q5U3C3 297 aa7.61□□□□□ -1.19
XRN1-213ENST00000489241 STK32AQ8WU08 396 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms