RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 RARSP54136 660 aaKnown RBP13.14□□□□□ -0.31
SKA1-204ENST00000488454 AMIGO3Q86WK7 504 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 SSH1Q8WYL5 1049 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 L3MBTL3Q96JM7 780 aaPredicted RBP13.14□□□□□ -0.31
SKA1-204ENST00000488454 NARFQ9UHQ1 456 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 COL15A1P39059 1388 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 RREB1Q92766 1687 aa13.14□□□□□ -0.31
SKA1-204ENST00000488454 ANKRD13DQ6ZTN6 518 aa13.13□□□□□ -0.31
SKA1-204ENST00000488454 RIC3Q7Z5B4 369 aa13.13□□□□□ -0.31
SKA1-204ENST00000488454 SLC16A10Q8TF71 515 aa13.13□□□□□ -0.31
SKA1-204ENST00000488454 BCL2L13Q9BXK5 485 aa13.13□□□□□ -0.31
SKA1-204ENST00000488454 PHAXQ9H814 394 aaKnown RBP13.13□□□□□ -0.31
SKA1-204ENST00000488454 ZNF652Q9Y2D9 606 aa13.13□□□□□ -0.31
SKA1-204ENST00000488454 CICQ96RK0 1608 aaPredicted RBP13.13□□□□□ -0.31
SKA1-204ENST00000488454 ERVV-1B6SEH8 477 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 FLIIQ13045 1269 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 FKBP5Q13451 457 aaPredicted RBP13.12□□□□□ -0.31
SKA1-204ENST00000488454 USPL1Q5W0Q7 1092 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 TTLL7Q6ZT98 887 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 LRP10Q7Z4F1 713 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 MRPL50Q8N5N7 158 aaKnown RBP13.12□□□□□ -0.31
SKA1-204ENST00000488454 SRP68Q9UHB9 627 aaKnown RBP13.12□□□□□ -0.31
SKA1-204ENST00000488454 RCAN3Q9UKA8 241 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 NUP188Q5SRE5 1749 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 MAP3K15Q6ZN16 1313 aa13.12□□□□□ -0.31
SKA1-204ENST00000488454 USP42Q9H9J4 1324 aaKnown RBP13.12□□□□□ -0.31
SKA1-204ENST00000488454 IPO8O15397 1037 aaKnown RBP13.11□□□□□ -0.31
SKA1-204ENST00000488454 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
SKA1-204ENST00000488454 PLBD2Q8NHP8 589 aa13.11□□□□□ -0.31
SKA1-204ENST00000488454 ZBTB3Q9H5J0 574 aa13.11□□□□□ -0.31
SKA1-204ENST00000488454 TAF1LQ8IZX4 1826 aa13.11□□□□□ -0.31
SKA1-204ENST00000488454 COL5A3P25940 1745 aaPredicted RBP13.1□□□□□ -0.31
SKA1-204ENST00000488454 CAMTA2O94983 1202 aa13.1□□□□□ -0.31
SKA1-204ENST00000488454 HSP90AB3PQ58FF7 597 aa13.1□□□□□ -0.31
SKA1-204ENST00000488454 KSR2Q6VAB6 950 aa13.1□□□□□ -0.31
SKA1-204ENST00000488454 G2E3Q7L622 706 aa13.1□□□□□ -0.31
SKA1-204ENST00000488454 NOB1Q9ULX3 412 aaKnown RBP13.1□□□□□ -0.31
SKA1-204ENST00000488454 LAMB4A4D0S4 1761 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 PI4KAP2A4QPH2 592 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 BCAR3O75815 825 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 ZBTB7AO95365 584 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 GYS1P13807 737 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 BRPF1P55201 1214 aaPredicted RBP13.09□□□□□ -0.31
SKA1-204ENST00000488454 PI4KAP1Q8N8J0 262 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
SKA1-204ENST00000488454 PDGFDQ9GZP0 370 aaPredicted RBP13.09□□□□□ -0.31
SKA1-204ENST00000488454 MTFR1LQ9H019 292 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 BOLA1Q9Y3E2 137 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 PTPRCP08575 1304 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 KIF16BQ96L93 1317 aa13.09□□□□□ -0.31
SKA1-204ENST00000488454 MYH14Q7Z406 1995 aaKnown RBP13.09□□□□□ -0.31
SKA1-204ENST00000488454 NEXNQ0ZGT2 675 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 HLFQ16534 295 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 MSL1Q68DK7 614 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 GIGYF2Q6Y7W6 1299 aaKnown RBP13.08□□□□□ -0.32
SKA1-204ENST00000488454 BICDL1Q6ZP65 573 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 SETDB2Q96T68 719 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 API5Q9BZZ5 524 aaKnown RBP13.08□□□□□ -0.32
SKA1-204ENST00000488454 MAP3K2Q9Y2U5 619 aa13.08□□□□□ -0.32
SKA1-204ENST00000488454 SRCAPQ6ZRS2 3230 aa13.07□□□□□ -0.32
SKA1-204ENST00000488454 POLD1P28340 1107 aa13.07□□□□□ -0.32
SKA1-204ENST00000488454 TCIRG1Q13488 830 aa13.07□□□□□ -0.32
SKA1-204ENST00000488454 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.07□□□□□ -0.32
SKA1-204ENST00000488454 NIP7Q9Y221 180 aaKnown RBP eCLIP13.07□□□□□ -0.32
SKA1-204ENST00000488454 NPHP1O15259 732 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 ZKSCAN2Q63HK3 967 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 TBC1D9BQ66K14 1250 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 SLC4A10Q6U841 1118 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 DNAAF4Q8WXU2 420 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 ARHGAP45Q92619 1136 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 MYD88Q99836 296 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 METTL22Q9BUU2 404 aaPredicted RBP13.06□□□□□ -0.32
SKA1-204ENST00000488454 BCL2L12Q9HB09 334 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 SPON1Q9HCB6 807 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
SKA1-204ENST00000488454 G3V3G9 751 aa13.05□□□□□ -0.32
SKA1-204ENST00000488454 MMP10P09238 476 aa13.05□□□□□ -0.32
SKA1-204ENST00000488454 GPTP24298 496 aa13.05□□□□□ -0.32
SKA1-204ENST00000488454 NFIXQ14938 502 aa13.05□□□□□ -0.32
SKA1-204ENST00000488454 UBR3Q6ZT12 1888 aa13.05□□□□□ -0.32
SKA1-204ENST00000488454 F6X3S4 739 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 ATP5J2-PTCD1G3V325 749 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
SKA1-204ENST00000488454 MS4A1P11836 297 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 GTF2E1P29083 439 aaPredicted RBP13.04□□□□□ -0.32
SKA1-204ENST00000488454 TM4SF1P30408 202 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 PARP10Q53GL7 1025 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 ATF7IPQ6VMQ6 1270 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 C3orf67Q6ZVT6 689 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 PPP1R42Q7Z4L9 355 aa13.04□□□□□ -0.32
SKA1-204ENST00000488454 TMEM121BQ9BXQ6 578 aaPredicted RBP13.04□□□□□ -0.32
SKA1-204ENST00000488454 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.04□□□□□ -0.32
SKA1-204ENST00000488454 FAM177BA6PVY3 158 aa13.03□□□□□ -0.32
SKA1-204ENST00000488454 TRIM28Q13263 835 aaKnown RBP13.03□□□□□ -0.32
SKA1-204ENST00000488454 TPTE2Q6XPS3 522 aa13.03□□□□□ -0.32
SKA1-204ENST00000488454 NBPF5PQ86XG9 351 aaPredicted RBP13.03□□□□□ -0.32
SKA1-204ENST00000488454 FTSJ3Q8IY81 847 aaKnown RBP13.03□□□□□ -0.32
SKA1-204ENST00000488454 ZNF34Q8IZ26 560 aa13.03□□□□□ -0.32
SKA1-204ENST00000488454 NYXQ9GZU5 481 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms