RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 RPGRQ92834 1020 aaKnown RBP19.27■□□□□ 0.68
TRIM54-204ENST00000488321 RNF181Q9P0P0 153 aa19.27■□□□□ 0.68
TRIM54-204ENST00000488321 DDX58O95786 925 aaKnown RBP19.26■□□□□ 0.67
TRIM54-204ENST00000488321 ADCY9O60503 1353 aa19.26■□□□□ 0.67
TRIM54-204ENST00000488321 ANKRD31Q8N7Z5 1873 aa19.25■□□□□ 0.67
TRIM54-204ENST00000488321 ALDH1B1P30837 517 aa19.25■□□□□ 0.67
TRIM54-204ENST00000488321 NLRP3Q96P20 1036 aa19.25■□□□□ 0.67
TRIM54-204ENST00000488321 GPBP1L1Q9HC44 474 aaPredicted RBP19.25■□□□□ 0.67
TRIM54-204ENST00000488321 RNF123Q5XPI4 1314 aa19.25■□□□□ 0.67
TRIM54-204ENST00000488321 BRCA1P38398 1863 aaKnown RBP19.24■□□□□ 0.67
TRIM54-204ENST00000488321 CHD4Q14839 1912 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 SLC4A2P04920 1241 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 CRY2Q49AN0 593 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 MYD88Q99836 296 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 ISCA1Q9BUE6 129 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 COL11A2P13942 1736 aaPredicted RBP19.24■□□□□ 0.67
TRIM54-204ENST00000488321 SH3TC1Q8TE82 1336 aa19.24■□□□□ 0.67
TRIM54-204ENST00000488321 NFKBIEO00221 500 aa19.23■□□□□ 0.67
TRIM54-204ENST00000488321 HCLS1P14317 486 aaPredicted RBP19.23■□□□□ 0.67
TRIM54-204ENST00000488321 SOGA3Q5TF21 947 aa19.23■□□□□ 0.67
TRIM54-204ENST00000488321 C3orf67Q6ZVT6 689 aa19.23■□□□□ 0.67
TRIM54-204ENST00000488321 SYNE4Q8N205 404 aa19.23■□□□□ 0.67
TRIM54-204ENST00000488321 RIC1Q4ADV7 1423 aa19.23■□□□□ 0.67
TRIM54-204ENST00000488321 VAMP4O75379 141 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 LMNB1P20700 586 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 CCDC93Q567U6 631 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 SLC10A5Q5PT55 438 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 RBM17Q96I25 401 aaKnown RBP19.22■□□□□ 0.67
TRIM54-204ENST00000488321 MAP3K2Q9Y2U5 619 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 ZNF521Q96K83 1311 aa19.22■□□□□ 0.67
TRIM54-204ENST00000488321 DLEC1Q9Y238 1755 aa19.21■□□□□ 0.67
TRIM54-204ENST00000488321 NUP98P52948 1817 aa19.21■□□□□ 0.67
TRIM54-204ENST00000488321 RTL5Q5HYW3 569 aaPredicted RBP19.21■□□□□ 0.67
TRIM54-204ENST00000488321 MIER1Q8N108 512 aa19.21■□□□□ 0.67
TRIM54-204ENST00000488321 FAM89AQ96GI7 184 aa19.21■□□□□ 0.67
TRIM54-204ENST00000488321 TAOK3Q9H2K8 898 aa19.21■□□□□ 0.67
TRIM54-204ENST00000488321 PI4KAP2A4QPH2 592 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 OLFM4Q6UX06 510 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 KSR2Q6VAB6 950 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 G2E3Q7L622 706 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 PI4KAP1Q8N8J0 262 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 ARFGEF1Q9Y6D6 1849 aa19.2■□□□□ 0.66
TRIM54-204ENST00000488321 TNRC6CQ9HCJ0 1690 aaKnown RBP19.2■□□□□ 0.66
TRIM54-204ENST00000488321 HOXA10P31260 410 aaPredicted RBP19.19■□□□□ 0.66
TRIM54-204ENST00000488321 PRELPP51888 382 aa19.19■□□□□ 0.66
TRIM54-204ENST00000488321 TRIM28Q13263 835 aaKnown RBP19.19■□□□□ 0.66
TRIM54-204ENST00000488321 C7orf43Q8WVR3 580 aa19.19■□□□□ 0.66
TRIM54-204ENST00000488321 METTL22Q9BUU2 404 aaPredicted RBP19.19■□□□□ 0.66
TRIM54-204ENST00000488321 FLIIQ13045 1269 aa19.18■□□□□ 0.66
TRIM54-204ENST00000488321 CRAMP1Q96RY5 1269 aa19.18■□□□□ 0.66
TRIM54-204ENST00000488321 E9PSI1 815 aa19.17■□□□□ 0.66
TRIM54-204ENST00000488321 PPEF1O14829 653 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-204ENST00000488321 NEXNQ0ZGT2 675 aa19.17■□□□□ 0.66
TRIM54-204ENST00000488321 FKBP5Q13451 457 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-204ENST00000488321 RTKN2Q8IZC4 609 aa19.17■□□□□ 0.66
TRIM54-204ENST00000488321 CCDC191Q8NCU4 936 aa19.17■□□□□ 0.66
TRIM54-204ENST00000488321 CWC25Q9NXE8 425 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-204ENST00000488321 IRS4O14654 1257 aaPredicted RBP19.16■□□□□ 0.66
TRIM54-204ENST00000488321 DDX46Q7L014 1031 aaKnown RBP19.16■□□□□ 0.66
TRIM54-204ENST00000488321 TMX4Q9H1E5 349 aaPredicted RBP19.16■□□□□ 0.66
TRIM54-204ENST00000488321 LTBP3Q9NS15 1303 aa19.16■□□□□ 0.66
TRIM54-204ENST00000488321 FKBP4Q02790 459 aaKnown RBP eCLIP19.15■□□□□ 0.66
TRIM54-204ENST00000488321 ZBTB38Q8NAP3 1195 aaPredicted RBP19.15■□□□□ 0.66
TRIM54-204ENST00000488321 ABCC4O15439 1325 aa19.15■□□□□ 0.66
TRIM54-204ENST00000488321 CC2D2BQ6DHV5 1058 aa19.14■□□□□ 0.65
TRIM54-204ENST00000488321 JARID2Q92833 1246 aaPredicted RBP19.14■□□□□ 0.65
TRIM54-204ENST00000488321 KDM2BQ8NHM5 1336 aa19.14■□□□□ 0.65
TRIM54-204ENST00000488321 PCCAP05165 728 aaPredicted RBP19.13■□□□□ 0.65
TRIM54-204ENST00000488321 IGKV5-2P06315 115 aa19.13■□□□□ 0.65
TRIM54-204ENST00000488321 HSP90B1P14625 803 aaKnown RBP19.13■□□□□ 0.65
TRIM54-204ENST00000488321 SLFN5Q08AF3 891 aa19.13■□□□□ 0.65
TRIM54-204ENST00000488321 CWF19L2Q2TBE0 894 aaKnown RBP19.13■□□□□ 0.65
TRIM54-204ENST00000488321 CDCA7LQ96GN5 454 aa19.13■□□□□ 0.65
TRIM54-204ENST00000488321 ZNF277Q9NRM2 450 aaPredicted RBP19.13■□□□□ 0.65
TRIM54-204ENST00000488321 ZC3H4Q9UPT8 1303 aaKnown RBP19.13■□□□□ 0.65
TRIM54-204ENST00000488321 ANKRD36CQ5JPF3 1778 aa19.13■□□□□ 0.65
TRIM54-204ENST00000488321 SLX4Q8IY92 1834 aa19.13■□□□□ 0.65
TRIM54-204ENST00000488321 SLC51AQ86UW1 340 aa19.12■□□□□ 0.65
TRIM54-204ENST00000488321 DNAAF4Q8WXU2 420 aa19.12■□□□□ 0.65
TRIM54-204ENST00000488321 NMRK2Q9NPI5 230 aa19.12■□□□□ 0.65
TRIM54-204ENST00000488321 BBOX1O75936 387 aa19.11■□□□□ 0.65
TRIM54-204ENST00000488321 C1QTNF8P60827 252 aa19.11■□□□□ 0.65
TRIM54-204ENST00000488321 GRAPQ13588 217 aa19.11■□□□□ 0.65
TRIM54-204ENST00000488321 SF3B3Q15393 1217 aaKnown RBP19.11■□□□□ 0.65
TRIM54-204ENST00000488321 GRAPLQ8TC17 118 aaPredicted RBP19.11■□□□□ 0.65
TRIM54-204ENST00000488321 ATP6V0A2Q9Y487 856 aa19.11■□□□□ 0.65
TRIM54-204ENST00000488321 ARFGEF2Q9Y6D5 1785 aa19.11■□□□□ 0.65
TRIM54-204ENST00000488321 NEURL1BA8MQ27 555 aa19.1■□□□□ 0.65
TRIM54-204ENST00000488321 F6X3S4 739 aa19.09■□□□□ 0.65
TRIM54-204ENST00000488321 KIF3CO14782 793 aa19.09■□□□□ 0.65
TRIM54-204ENST00000488321 GRIPAP1Q4V328 841 aa19.09■□□□□ 0.65
TRIM54-204ENST00000488321 DPY19L2Q6NUT2 758 aa19.09■□□□□ 0.65
TRIM54-204ENST00000488321 PSMD1Q99460 953 aa19.09■□□□□ 0.65
TRIM54-204ENST00000488321 GLTPD2A6NH11 291 aa19.08■□□□□ 0.64
TRIM54-204ENST00000488321 PDE8AO60658 829 aa19.08■□□□□ 0.64
TRIM54-204ENST00000488321 IARSP41252 1262 aaKnown RBP19.08■□□□□ 0.64
TRIM54-204ENST00000488321 CCDC85AQ96PX6 553 aaPredicted RBP19.08■□□□□ 0.64
TRIM54-204ENST00000488321 RRAGCQ9HB90 399 aa19.08■□□□□ 0.64
TRIM54-204ENST00000488321 CCDC152Q4G0S7 254 aa19.07■□□□□ 0.64
TRIM54-204ENST00000488321 SP8Q8IXZ3 490 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms