RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ZNF277Q9NRM2 450 aaPredicted RBP29.46■■■□□ 2.31
PTPN4-211ENST00000488279 ARFGEF2Q9Y6D5 1785 aa29.46■■■□□ 2.31
PTPN4-211ENST00000488279 DDNO94850 711 aaPredicted RBP29.45■■■□□ 2.31
PTPN4-211ENST00000488279 HSP90AB3PQ58FF7 597 aa29.45■■■□□ 2.31
PTPN4-211ENST00000488279 RBM17Q96I25 401 aaKnown RBP29.45■■■□□ 2.31
PTPN4-211ENST00000488279 CC2D2BQ6DHV5 1058 aa29.44■■■□□ 2.3
PTPN4-211ENST00000488279 NLRP3Q96P20 1036 aa29.44■■■□□ 2.3
PTPN4-211ENST00000488279 CACNA1SQ13698 1873 aa29.44■■■□□ 2.3
PTPN4-211ENST00000488279 RIC1Q4ADV7 1423 aa29.44■■■□□ 2.3
PTPN4-211ENST00000488279 HOXB7P09629 217 aa29.43■■■□□ 2.3
PTPN4-211ENST00000488279 HDGFL1Q5TGJ6 251 aa29.43■■■□□ 2.3
PTPN4-211ENST00000488279 SYNE4Q8N205 404 aa29.43■■■□□ 2.3
PTPN4-211ENST00000488279 APAF1O14727 1248 aa29.42■■■□□ 2.3
PTPN4-211ENST00000488279 SLC10A5Q5PT55 438 aa29.42■■■□□ 2.3
PTPN4-211ENST00000488279 CRAMP1Q96RY5 1269 aa29.42■■■□□ 2.3
PTPN4-211ENST00000488279 DICER1Q9UPY3 1922 aaKnown RBP29.41■■■□□ 2.3
PTPN4-211ENST00000488279 TCIRG1Q13488 830 aa29.41■■■□□ 2.3
PTPN4-211ENST00000488279 CHPF2Q9P2E5 772 aa29.41■■■□□ 2.3
PTPN4-211ENST00000488279 HTRA3P83110 453 aa29.4■■■□□ 2.3
PTPN4-211ENST00000488279 GRIPAP1Q4V328 841 aa29.4■■■□□ 2.3
PTPN4-211ENST00000488279 PSMD1Q99460 953 aa29.4■■■□□ 2.3
PTPN4-211ENST00000488279 DBF4Q9UBU7 674 aaPredicted RBP29.4■■■□□ 2.3
PTPN4-211ENST00000488279 WDR90Q96KV7 1748 aa29.4■■■□□ 2.3
PTPN4-211ENST00000488279 ZEB1P37275 1124 aaPredicted RBP29.39■■■□□ 2.3
PTPN4-211ENST00000488279 IARSP41252 1262 aaKnown RBP29.39■■■□□ 2.3
PTPN4-211ENST00000488279 CALD1Q05682 793 aaKnown RBP29.39■■■□□ 2.3
PTPN4-211ENST00000488279 C3orf67Q6ZVT6 689 aa29.39■■■□□ 2.3
PTPN4-211ENST00000488279 NLRP10Q86W26 655 aa29.39■■■□□ 2.3
PTPN4-211ENST00000488279 MBIPQ9NS73 344 aa29.39■■■□□ 2.3
PTPN4-211ENST00000488279 RNF123Q5XPI4 1314 aa29.39■■■□□ 2.3
PTPN4-211ENST00000488279 IQCA1LA6NCM1 817 aa29.38■■■□□ 2.29
PTPN4-211ENST00000488279 DUSP27Q5VZP5 1158 aa29.38■■■□□ 2.29
PTPN4-211ENST00000488279 PPEF1O14829 653 aaPredicted RBP29.36■■■□□ 2.29
PTPN4-211ENST00000488279 ZNF853P0CG23 659 aa29.36■■■□□ 2.29
PTPN4-211ENST00000488279 ANKRD13DQ6ZTN6 518 aa29.36■■■□□ 2.29
PTPN4-211ENST00000488279 JDP2Q8WYK2 163 aa29.36■■■□□ 2.29
PTPN4-211ENST00000488279 L3MBTL3Q96JM7 780 aaPredicted RBP29.36■■■□□ 2.29
PTPN4-211ENST00000488279 TMX4Q9H1E5 349 aaPredicted RBP29.36■■■□□ 2.29
PTPN4-211ENST00000488279 IFT57Q9NWB7 429 aa29.36■■■□□ 2.29
PTPN4-211ENST00000488279 TRMT112Q9UI30 125 aaKnown RBP29.36■■■□□ 2.29
PTPN4-211ENST00000488279 TCERG1O14776 1098 aaKnown RBP29.35■■■□□ 2.29
PTPN4-211ENST00000488279 GNAI1P63096 354 aa29.35■■■□□ 2.29
PTPN4-211ENST00000488279 PLBD2Q8NHP8 589 aa29.35■■■□□ 2.29
PTPN4-211ENST00000488279 KLRG1Q96E93 195 aa29.35■■■□□ 2.29
PTPN4-211ENST00000488279 HYPKQ9NX55 129 aa29.35■■■□□ 2.29
PTPN4-211ENST00000488279 FZD9O00144 591 aa29.34■■■□□ 2.29
PTPN4-211ENST00000488279 ZNF541Q9H0D2 1346 aa29.33■■■□□ 2.29
PTPN4-211ENST00000488279 SNED1Q8TER0 1413 aa29.32■■■□□ 2.28
PTPN4-211ENST00000488279 SH3TC1Q8TE82 1336 aa29.32■■■□□ 2.28
PTPN4-211ENST00000488279 HCLS1P14317 486 aaPredicted RBP29.32■■■□□ 2.28
PTPN4-211ENST00000488279 CHADLQ6NUI6 762 aa29.32■■■□□ 2.28
PTPN4-211ENST00000488279 TAF1DQ9H5J8 278 aaPredicted RBP29.31■■■□□ 2.28
PTPN4-211ENST00000488279 ATP6V0A2Q9Y487 856 aa29.31■■■□□ 2.28
PTPN4-211ENST00000488279 BBOX1O75936 387 aa29.3■■■□□ 2.28
PTPN4-211ENST00000488279 ABCC4O15439 1325 aa29.29■■■□□ 2.28
PTPN4-211ENST00000488279 POTEIP0CG38 1075 aa29.28■■■□□ 2.28
PTPN4-211ENST00000488279 POTEJP0CG39 1038 aa29.28■■■□□ 2.28
PTPN4-211ENST00000488279 EIF6P56537 245 aaKnown RBP29.28■■■□□ 2.28
PTPN4-211ENST00000488279 DDX46Q7L014 1031 aaKnown RBP29.28■■■□□ 2.28
PTPN4-211ENST00000488279 GPC2Q8N158 579 aa29.28■■■□□ 2.28
PTPN4-211ENST00000488279 LARGE2Q8N3Y3 721 aa29.28■■■□□ 2.28
PTPN4-211ENST00000488279 HACL1Q9UJ83 578 aa29.28■■■□□ 2.28
PTPN4-211ENST00000488279 ELL2O00472 640 aaPredicted RBP29.27■■■□□ 2.28
PTPN4-211ENST00000488279 LDHDQ86WU2 507 aa29.27■■■□□ 2.28
PTPN4-211ENST00000488279 ISCA1Q9BUE6 129 aa29.27■■■□□ 2.28
PTPN4-211ENST00000488279 ATP5J2-PTCD1G3V325 749 aa29.26■■■□□ 2.27
PTPN4-211ENST00000488279 CCDC184Q52MB2 194 aa29.26■■■□□ 2.27
PTPN4-211ENST00000488279 SLC51AQ86UW1 340 aa29.26■■■□□ 2.27
PTPN4-211ENST00000488279 ZNF428Q96B54 188 aa29.26■■■□□ 2.27
PTPN4-211ENST00000488279 SP8Q8IXZ3 490 aa29.25■■■□□ 2.27
PTPN4-211ENST00000488279 JMYQ8N9B5 988 aa29.25■■■□□ 2.27
PTPN4-211ENST00000488279 CHMP4AQ9BY43 222 aa29.25■■■□□ 2.27
PTPN4-211ENST00000488279 PCNTO95613 3336 aa29.25■■■□□ 2.27
PTPN4-211ENST00000488279 EPHX2P34913 555 aa29.24■■■□□ 2.27
PTPN4-211ENST00000488279 EAPPQ56P03 285 aaPredicted RBP29.24■■■□□ 2.27
PTPN4-211ENST00000488279 RIC3Q7Z5B4 369 aa29.24■■■□□ 2.27
PTPN4-211ENST00000488279 VPS33BQ9H267 617 aa29.24■■■□□ 2.27
PTPN4-211ENST00000488279 GOLGA2Q08379 1002 aa29.23■■■□□ 2.27
PTPN4-211ENST00000488279 TRIM28Q13263 835 aaKnown RBP29.23■■■□□ 2.27
PTPN4-211ENST00000488279 C8orf58Q8NAV2 365 aa29.23■■■□□ 2.27
PTPN4-211ENST00000488279 SUPT20HQ8NEM7 779 aa29.23■■■□□ 2.27
PTPN4-211ENST00000488279 FAM89AQ96GI7 184 aa29.23■■■□□ 2.27
PTPN4-211ENST00000488279 GJA3Q9Y6H8 435 aa29.23■■■□□ 2.27
PTPN4-211ENST00000488279 PPIP5K2O43314 1243 aa29.22■■■□□ 2.27
PTPN4-211ENST00000488279 GRAPQ13588 217 aa29.22■■■□□ 2.27
PTPN4-211ENST00000488279 PNMA8AQ86V59 439 aaPredicted RBP29.22■■■□□ 2.27
PTPN4-211ENST00000488279 NIM1KQ8IY84 436 aa29.22■■■□□ 2.27
PTPN4-211ENST00000488279 GRAPLQ8TC17 118 aaPredicted RBP29.22■■■□□ 2.27
PTPN4-211ENST00000488279 CLEC11AQ9Y240 323 aa29.22■■■□□ 2.27
PTPN4-211ENST00000488279 ANKRD36CQ5JPF3 1778 aa29.21■■■□□ 2.27
PTPN4-211ENST00000488279 DPP8Q6V1X1 898 aaPredicted RBP29.21■■■□□ 2.27
PTPN4-211ENST00000488279 RTFDC1Q9BY42 306 aaPredicted RBP29.21■■■□□ 2.27
PTPN4-211ENST00000488279 SCN4AP35499 1836 aa29.2■■■□□ 2.27
PTPN4-211ENST00000488279 MPNDQ8N594 471 aa29.2■■■□□ 2.26
PTPN4-211ENST00000488279 PHAXQ9H814 394 aaKnown RBP29.2■■■□□ 2.26
PTPN4-211ENST00000488279 AOC3Q16853 763 aa29.19■■■□□ 2.26
PTPN4-211ENST00000488279 CCDC30Q5VVM6 783 aa29.19■■■□□ 2.26
PTPN4-211ENST00000488279 TMC4Q7Z404 712 aa29.19■■■□□ 2.26
PTPN4-211ENST00000488279 ZNF316A6NFI3 1004 aaPredicted RBP29.18■■■□□ 2.26
PTPN4-211ENST00000488279 SF3B3Q15393 1217 aaKnown RBP29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 470.5 ms