RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 SENP3-EIF4A1A0A087X0R7 540 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 IPO8O15397 1037 aaKnown RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 ALDH1L1O75891 902 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 PCCAP05165 728 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 HOXA10P31260 410 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 PDE6BP35913 854 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 ST5P78524 1137 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 AIMP1Q12904 312 aaKnown RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 FKBP5Q13451 457 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 G2E3Q7L622 706 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 NBPF5PQ86XG9 351 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 ZBTB38Q8NAP3 1195 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 PLA2G12BQ9BX93 195 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 FHDC1Q9C0D6 1143 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 PPP1R1BQ9UD71 204 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 MAP3K2Q9Y2U5 619 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 ZNF330Q9Y3S2 320 aaPredicted RBP8.48□□□□□ -1.05
PTPRE-209ENST00000487428 UTYO14607 1347 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 RTL9Q8NET4 1388 aa8.48□□□□□ -1.05
PTPRE-209ENST00000487428 SLX4Q8IY92 1834 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 NEURL1BA8MQ27 555 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 IGKV5-2P06315 115 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 BEND3Q5T5X7 828 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 SUSD4Q5VX71 490 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 UTP14AQ9BVJ6 771 aaKnown RBP8.47□□□□□ -1.05
PTPRE-209ENST00000487428 API5Q9BZZ5 524 aaKnown RBP8.47□□□□□ -1.05
PTPRE-209ENST00000487428 SMC4Q9NTJ3 1288 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 CWC25Q9NXE8 425 aaPredicted RBP8.47□□□□□ -1.05
PTPRE-209ENST00000487428 SH3TC1Q8TE82 1336 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 CCDC88AQ3V6T2 1871 aa8.47□□□□□ -1.05
PTPRE-209ENST00000487428 H7C1W4 665 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 SRGNP10124 158 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 KCNA3P22001 575 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 GCKRQ14397 625 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 SF3B3Q15393 1217 aaKnown RBP8.46□□□□□ -1.06
PTPRE-209ENST00000487428 GRIPAP1Q4V328 841 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 STYK1Q6J9G0 422 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 ABCC4O15439 1325 aa8.46□□□□□ -1.06
PTPRE-209ENST00000487428 H0YIN7 160 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 MS4A1P11836 297 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 CCT4P50991 539 aaKnown RBP8.45□□□□□ -1.06
PTPRE-209ENST00000487428 CASP7P55210 303 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 INTS3Q68E01 1043 aaKnown RBP8.45□□□□□ -1.06
PTPRE-209ENST00000487428 ATF7IPQ6VMQ6 1270 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 MASTLQ96GX5 879 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 CRAMP1Q96RY5 1269 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 HDAC5Q9UQL6 1122 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 GOLGB1Q14789 3259 aaKnown RBP8.45□□□□□ -1.06
PTPRE-209ENST00000487428 ABCC12Q96J65 1359 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 A0A1B0GUL6 1792 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 SNED1Q8TER0 1413 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 TAF1P21675 1872 aa8.45□□□□□ -1.06
PTPRE-209ENST00000487428 LTBP1Q14766 1721 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 NPR1P16066 1061 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 GPTP24298 496 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 ALDH1B1P30837 517 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 CC2D2BQ6DHV5 1058 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 BICDL1Q6ZP65 573 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 TMC4Q7Z404 712 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 CNKSR1Q969H4 720 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 NLRP3Q96P20 1036 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 MYD88Q99836 296 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 SRCIN1Q9C0H9 1055 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 PIM2Q9P1W9 311 aa8.44□□□□□ -1.06
PTPRE-209ENST00000487428 TRMT112Q9UI30 125 aaKnown RBP8.44□□□□□ -1.06
PTPRE-209ENST00000487428 ATP5J2-PTCD1G3V325 749 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 GRM8O00222 908 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 TCERG1O14776 1098 aaKnown RBP8.43□□□□□ -1.06
PTPRE-209ENST00000487428 GRIN3BO60391 1043 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 PDE8AO60658 829 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 CSF1RP07333 972 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 TRIM27P14373 513 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 ERFEQ4G0M1 354 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 SOGA3Q5TF21 947 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 ZKSCAN2Q63HK3 967 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 RCAN3Q9UKA8 241 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 NOB1Q9ULX3 412 aaKnown RBP8.43□□□□□ -1.06
PTPRE-209ENST00000487428 LTBP3Q9NS15 1303 aa8.43□□□□□ -1.06
PTPRE-209ENST00000487428 UTRNP46939 3433 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 F6X3S4 739 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 IRS4O14654 1257 aaPredicted RBP8.42□□□□□ -1.06
PTPRE-209ENST00000487428 BCAR3O75815 825 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 BBOX1O75936 387 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 DPEP1P16444 411 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 GTF2E1P29083 439 aaPredicted RBP8.42□□□□□ -1.06
PTPRE-209ENST00000487428 PDE3AQ14432 1141 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 RABL6Q3YEC7 729 aaPredicted RBP8.42□□□□□ -1.06
PTPRE-209ENST00000487428 TTLL6Q8N841 843 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 NLGN2Q8NFZ4 835 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 C7orf43Q8WVR3 580 aa8.42□□□□□ -1.06
PTPRE-209ENST00000487428 PSME4Q14997 1843 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 NPHP1O15259 732 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 CWF19L2Q2TBE0 894 aaKnown RBP8.41□□□□□ -1.06
PTPRE-209ENST00000487428 DALRD3Q5D0E6 543 aaKnown RBP8.41□□□□□ -1.06
PTPRE-209ENST00000487428 NUTM1Q86Y26 1132 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 C2CD5Q86YS7 1000 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 FAM89AQ96GI7 184 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 USP44Q9H0E7 712 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 VPS33BQ9H267 617 aa8.41□□□□□ -1.06
PTPRE-209ENST00000487428 SPEF2Q9C093 1822 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms