RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 UBE3BQ7Z3V4 1068 aa14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 DNAJC25Q9H1X3 360 aa14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 DBF4Q9UBU7 674 aaPredicted RBP14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 ZBTB22O15209 634 aa14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 UVSSAQ2YD98 709 aa14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 NRBP1Q9UHY1 535 aa14.57□□□□□ -0.08
SHROOM3-208ENST00000486758 SETBP1Q9Y6X0 1596 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 GLRX3O76003 335 aaKnown RBP14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 SF3A1Q15459 793 aaKnown RBP14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 CHMP4AQ9BY43 222 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 A2ML1A8K2U0 1454 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 NRXN1Q9ULB1 1477 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 ZNF165P49910 485 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 PROSER3Q2NL68 480 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 SOS1Q07889 1333 aaPredicted RBP14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 PLEKHG3A1L390 1219 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 GUCY1B3Q02153 619 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 WASHC4Q2M389 1173 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 RAB11FIP4Q86YS3 637 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 HDAC5Q9UQL6 1122 aa14.56□□□□□ -0.08
SHROOM3-208ENST00000486758 COL3A1P02461 1466 aaPredicted RBP14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 SMC2O95347 1197 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 TPM3P06753 285 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 NFATC2IPQ8NCF5 419 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 SIGLEC1Q9BZZ2 1709 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 TTC21AQ8NDW8 1320 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 POLR3GO15318 223 aaPredicted RBP14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 NCBP3Q53F19 620 aaKnown RBP14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 MAP3K5Q99683 1374 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 RNF20Q5VTR2 975 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 ZNF710Q8N1W2 664 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 TMX1Q9H3N1 280 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 ECHDC1Q9NTX5 307 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 CPS1P31327 1500 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 CD163L1Q9NR16 1453 aa14.55□□□□□ -0.08
SHROOM3-208ENST00000486758 APPP05067 770 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 TATP17735 454 aaPredicted RBP14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 PTPN14Q15678 1187 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 BLOC1S2Q6QNY1 142 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 COPS6Q7L5N1 327 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 SDF4Q9BRK5 362 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 GTPBP4Q9BZE4 634 aaKnown RBP14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 VWDEQ8N2E2 1590 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 A0A087WWV3 80 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 ZSCAN20P17040 1043 aaPredicted RBP14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 FKBP4Q02790 459 aaKnown RBP eCLIP14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 TYRO3Q06418 890 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 SKIDA1Q1XH10 827 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 DDX46Q7L014 1031 aaKnown RBP14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 PIK3C2BO00750 1634 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 GCP02774 474 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 EVA1CP58658 441 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 XAGE3Q8WTP9 111 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 ZBTB3Q9H5J0 574 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 SNRKQ9NRH2 765 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 KNDC1Q76NI1 1749 aa14.54□□□□□ -0.08
SHROOM3-208ENST00000486758 CABP4P57796 275 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 CLEC17AQ6ZS10 378 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 ERCC4Q92889 916 aaPredicted RBP14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 FAM227BQ96M60 508 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 DEPDC5O75140 1603 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 SBNO1A3KN83 1393 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 ADAMTS2O95450 1211 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 FAM200AQ8TCP9 573 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 ZC3H13Q5T200 1668 aaKnown RBP14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 LMTK2Q8IWU2 1503 aa14.53□□□□□ -0.08
SHROOM3-208ENST00000486758 HTATSF1O43719 755 aaKnown RBP14.52□□□□□ -0.08
SHROOM3-208ENST00000486758 CEP135Q66GS9 1140 aa14.52□□□□□ -0.08
SHROOM3-208ENST00000486758 KRT28Q7Z3Y7 464 aa14.52□□□□□ -0.08
SHROOM3-208ENST00000486758 INTS4Q96HW7 963 aaKnown RBP14.52□□□□□ -0.08
SHROOM3-208ENST00000486758 ADGRB2O60241 1585 aa14.52□□□□□ -0.08
SHROOM3-208ENST00000486758 AGLP35573 1532 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 ATP7BP35670 1465 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 PTCH1Q13635 1447 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 A0A087WZG4 1122 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 ISM2Q6H9L7 571 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 CCDC73Q6ZRK6 1079 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 RASEFQ8IZ41 740 aa14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 BICC1Q9H694 974 aaKnown RBP14.52□□□□□ -0.09
SHROOM3-208ENST00000486758 MYO3AQ8NEV4 1616 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 CCDC66A2RUB6 948 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 LIG1P18858 919 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 GTF2F1P35269 517 aaKnown RBP eCLIP14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 BRPF1P55201 1214 aaPredicted RBP14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 TOM1L2Q6ZVM7 507 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 KIAA1210Q9ULL0 1709 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 ARHGAP31Q2M1Z3 1444 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 SRCAPQ6ZRS2 3230 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 CCT2P78371 535 aaKnown RBP14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 KCNH5Q8NCM2 988 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 AATKQ6ZMQ8 1374 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 CHST3Q7LGC8 479 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 MNS1Q8NEH6 495 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 GTF3C6Q969F1 213 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 RBM8AQ9Y5S9 174 aaKnown RBP14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 PPLO60437 1756 aa14.51□□□□□ -0.09
SHROOM3-208ENST00000486758 SNX14Q9Y5W7 946 aa14.5□□□□□ -0.09
SHROOM3-208ENST00000486758 USP6P35125 1406 aa14.5□□□□□ -0.09
SHROOM3-208ENST00000486758 REREQ9P2R6 1566 aa14.5□□□□□ -0.09
SHROOM3-208ENST00000486758 NMIQ13287 307 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms