RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 SOGA3Q5TF21 947 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 C3orf67Q6ZVT6 689 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 RIC3Q7Z5B4 369 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 NLRP10Q86W26 655 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 SYNE4Q8N205 404 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 PLBD2Q8NHP8 589 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 NLRP3Q96P20 1036 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 PHAXQ9H814 394 aaKnown RBP22.81■■□□□ 1.24
COL6A1-204ENST00000486023 RRAGCQ9HB90 399 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 KDM2BQ8NHM5 1336 aa22.81■■□□□ 1.24
COL6A1-204ENST00000486023 NUP98P52948 1817 aa22.8■■□□□ 1.24
COL6A1-204ENST00000486023 HCLS1P14317 486 aaPredicted RBP22.8■■□□□ 1.24
COL6A1-204ENST00000486023 DLEC1Q9Y238 1755 aa22.79■■□□□ 1.24
COL6A1-204ENST00000486023 C16orf71Q8IYS4 520 aaPredicted RBP22.79■■□□□ 1.24
COL6A1-204ENST00000486023 C7orf43Q8WVR3 580 aa22.79■■□□□ 1.24
COL6A1-204ENST00000486023 RBM17Q96I25 401 aaKnown RBP22.79■■□□□ 1.24
COL6A1-204ENST00000486023 GOLGA2Q08379 1002 aa22.78■■□□□ 1.24
COL6A1-204ENST00000486023 RTL5Q5HYW3 569 aaPredicted RBP22.78■■□□□ 1.24
COL6A1-204ENST00000486023 CCDC30Q5VVM6 783 aa22.78■■□□□ 1.24
COL6A1-204ENST00000486023 SLX4Q8IY92 1834 aa22.78■■□□□ 1.24
COL6A1-204ENST00000486023 CRY2Q49AN0 593 aa22.77■■□□□ 1.24
COL6A1-204ENST00000486023 IBTKQ9P2D0 1353 aaPredicted RBP22.76■■□□□ 1.23
COL6A1-204ENST00000486023 ZNF277Q9NRM2 450 aaPredicted RBP22.76■■□□□ 1.23
COL6A1-204ENST00000486023 TWISTNBQ3B726 338 aaPredicted RBP22.75■■□□□ 1.23
COL6A1-204ENST00000486023 SLC10A5Q5PT55 438 aa22.75■■□□□ 1.23
COL6A1-204ENST00000486023 SH3TC1Q8TE82 1336 aa22.75■■□□□ 1.23
COL6A1-204ENST00000486023 GLTPD2A6NH11 291 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 DPY19L2Q6NUT2 758 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 RTKN2Q8IZC4 609 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 FAM89AQ96GI7 184 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 MYD88Q99836 296 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 STK31Q9BXU1 1019 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 CHMP4AQ9BY43 222 aa22.74■■□□□ 1.23
COL6A1-204ENST00000486023 PPEF1O14829 653 aaPredicted RBP22.73■■□□□ 1.23
COL6A1-204ENST00000486023 HOXA10P31260 410 aaPredicted RBP22.73■■□□□ 1.23
COL6A1-204ENST00000486023 FKBP4Q02790 459 aaKnown RBP eCLIP22.73■■□□□ 1.23
COL6A1-204ENST00000486023 ISCA1Q9BUE6 129 aa22.73■■□□□ 1.23
COL6A1-204ENST00000486023 TMX4Q9H1E5 349 aaPredicted RBP22.73■■□□□ 1.23
COL6A1-204ENST00000486023 TNRC6CQ9HCJ0 1690 aaKnown RBP22.73■■□□□ 1.23
COL6A1-204ENST00000486023 TOMM70O94826 608 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 SLC51AQ86UW1 340 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 WDR63Q8IWG1 891 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 CRAMP1Q96RY5 1269 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 IL16Q14005 1332 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 LTBP3Q9NS15 1303 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 ZC3H4Q9UPT8 1303 aaKnown RBP22.72■■□□□ 1.23
COL6A1-204ENST00000486023 CACNA1SQ13698 1873 aa22.72■■□□□ 1.23
COL6A1-204ENST00000486023 DDX58O95786 925 aaKnown RBP22.71■■□□□ 1.23
COL6A1-204ENST00000486023 DDX46Q7L014 1031 aaKnown RBP22.7■■□□□ 1.22
COL6A1-204ENST00000486023 JARID2Q92833 1246 aaPredicted RBP22.7■■□□□ 1.22
COL6A1-204ENST00000486023 RNF123Q5XPI4 1314 aa22.7■■□□□ 1.22
COL6A1-204ENST00000486023 FANCIQ9NVI1 1328 aa22.7■■□□□ 1.22
COL6A1-204ENST00000486023 SBF1O95248 1867 aa22.7■■□□□ 1.22
COL6A1-204ENST00000486023 ABCC4O15439 1325 aa22.69■■□□□ 1.22
COL6A1-204ENST00000486023 SLC4A2P04920 1241 aa22.69■■□□□ 1.22
COL6A1-204ENST00000486023 EXOSC9Q06265 439 aaKnown RBP22.69■■□□□ 1.22
COL6A1-204ENST00000486023 NCBP3Q53F19 620 aaKnown RBP22.69■■□□□ 1.22
COL6A1-204ENST00000486023 MAP3K2Q9Y2U5 619 aa22.69■■□□□ 1.22
COL6A1-204ENST00000486023 RIC1Q4ADV7 1423 aa22.68■■□□□ 1.22
COL6A1-204ENST00000486023 DDNO94850 711 aaPredicted RBP22.68■■□□□ 1.22
COL6A1-204ENST00000486023 VEGFAP15692 232 aaPredicted RBP22.68■■□□□ 1.22
COL6A1-204ENST00000486023 SPINK5Q9NQ38 1064 aaPredicted RBP22.68■■□□□ 1.22
COL6A1-204ENST00000486023 IRS4O14654 1257 aaPredicted RBP22.67■■□□□ 1.22
COL6A1-204ENST00000486023 IARSP41252 1262 aaKnown RBP22.67■■□□□ 1.22
COL6A1-204ENST00000486023 CC2D2BQ6DHV5 1058 aa22.67■■□□□ 1.22
COL6A1-204ENST00000486023 G2E3Q7L622 706 aa22.67■■□□□ 1.22
COL6A1-204ENST00000486023 PI4KAP2A4QPH2 592 aa22.66■■□□□ 1.22
COL6A1-204ENST00000486023 PI4KAP1Q8N8J0 262 aa22.66■■□□□ 1.22
COL6A1-204ENST00000486023 HSPA6P17066 643 aa22.65■■□□□ 1.22
COL6A1-204ENST00000486023 METTL22Q9BUU2 404 aaPredicted RBP22.65■■□□□ 1.22
COL6A1-204ENST00000486023 FER1L6Q2WGJ9 1857 aa22.64■■□□□ 1.22
COL6A1-204ENST00000486023 BBOX1O75936 387 aa22.64■■□□□ 1.21
COL6A1-204ENST00000486023 TRIM28Q13263 835 aaKnown RBP22.64■■□□□ 1.21
COL6A1-204ENST00000486023 KSR2Q6VAB6 950 aa22.64■■□□□ 1.21
COL6A1-204ENST00000486023 RBM46Q8TBY0 533 aaKnown RBP22.64■■□□□ 1.21
COL6A1-204ENST00000486023 JDP2Q8WYK2 163 aa22.64■■□□□ 1.21
COL6A1-204ENST00000486023 PSMD1Q99460 953 aa22.64■■□□□ 1.21
COL6A1-204ENST00000486023 CWC25Q9NXE8 425 aaPredicted RBP22.64■■□□□ 1.21
COL6A1-204ENST00000486023 ATP6V0A2Q9Y487 856 aa22.64■■□□□ 1.21
COL6A1-204ENST00000486023 CCDC88AQ3V6T2 1871 aa22.63■■□□□ 1.21
COL6A1-204ENST00000486023 GRAPQ13588 217 aa22.63■■□□□ 1.21
COL6A1-204ENST00000486023 LARGE2Q8N3Y3 721 aa22.63■■□□□ 1.21
COL6A1-204ENST00000486023 ZBTB38Q8NAP3 1195 aaPredicted RBP22.63■■□□□ 1.21
COL6A1-204ENST00000486023 CCDC191Q8NCU4 936 aa22.63■■□□□ 1.21
COL6A1-204ENST00000486023 GRAPLQ8TC17 118 aaPredicted RBP22.63■■□□□ 1.21
COL6A1-204ENST00000486023 CCDC85AQ96PX6 553 aaPredicted RBP22.63■■□□□ 1.21
COL6A1-204ENST00000486023 MYH16Q9H6N6 1097 aa22.63■■□□□ 1.21
COL6A1-204ENST00000486023 VAMP4O75379 141 aa22.62■■□□□ 1.21
COL6A1-204ENST00000486023 NEXNQ0ZGT2 675 aa22.62■■□□□ 1.21
COL6A1-204ENST00000486023 ZNF541Q9H0D2 1346 aa22.61■■□□□ 1.21
COL6A1-204ENST00000486023 ARFGEF2Q9Y6D5 1785 aa22.61■■□□□ 1.21
COL6A1-204ENST00000486023 POTECB2RU33 542 aa22.61■■□□□ 1.21
COL6A1-204ENST00000486023 FKBP5Q13451 457 aaPredicted RBP22.61■■□□□ 1.21
COL6A1-204ENST00000486023 DPP8Q6V1X1 898 aaPredicted RBP22.61■■□□□ 1.21
COL6A1-204ENST00000486023 GJA3Q9Y6H8 435 aa22.61■■□□□ 1.21
COL6A1-204ENST00000486023 ANKRD36CQ5JPF3 1778 aa22.61■■□□□ 1.21
COL6A1-204ENST00000486023 TIAM2Q8IVF5 1701 aa22.6■■□□□ 1.21
COL6A1-204ENST00000486023 PPIP5K2O43314 1243 aa22.6■■□□□ 1.21
COL6A1-204ENST00000486023 SF3B3Q15393 1217 aaKnown RBP22.6■■□□□ 1.21
COL6A1-204ENST00000486023 CWF19L2Q2TBE0 894 aaKnown RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms