RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 ECHDC1Q9NTX5 307 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 USP16Q9Y5T5 823 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 TSPY3P0CV98 308 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 TSPY8P0CW00 308 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 CHRNA2Q15822 529 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 C8orf37Q96NL8 207 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 TOP2BQ02880 1626 aa12.17□□□□□ -0.46
SRGAP3-207ENST00000485983 TMCO5BA8MYB1 307 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 UBE3BQ7Z3V4 1068 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 BIN2Q9UBW5 565 aaPredicted RBP12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 PARP3Q9Y6F1 533 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 LMOD1P29536 600 aaPredicted RBP12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 DNA2P51530 1060 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 EMILIN1Q9Y6C2 1016 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 PHACTR2O75167 634 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 FLIIQ13045 1269 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 NCOA7Q8NI08 942 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 EHBP1L1Q8N3D4 1523 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 CCT2P78371 535 aaKnown RBP12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 ZCRB1Q8TBF4 217 aaKnown RBP12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 PTPRCP08575 1304 aa12.16□□□□□ -0.46
SRGAP3-207ENST00000485983 FSD2A1L4K1 749 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 KIF4AO95239 1232 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 MRPS9P82933 396 aaKnown RBP12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 ALS2CR12Q96Q35 445 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 NAA15Q9BXJ9 866 aaKnown RBP12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 UNC13AQ9UPW8 1703 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 F8W031 263 aaPredicted RBP12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 HSPA2P54652 639 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 SPECC1Q5M775 1068 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 TTC16Q8NEE8 873 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 LIMCH1Q9UPQ0 1083 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 SLFN5Q08AF3 891 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 UBE4AQ14139 1066 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 SLC4A8Q2Y0W8 1093 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 KANK3Q6NY19 840 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 ZC3H12CQ9C0D7 883 aaKnown RBP12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 DDB1Q16531 1140 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 ZNF804AQ7Z570 1209 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 NYXQ9GZU5 481 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 TFCP2L1Q9NZI6 479 aa12.15□□□□□ -0.46
SRGAP3-207ENST00000485983 GNAQP50148 359 aa12.15□□□□□ -0.47
SRGAP3-207ENST00000485983 METAP2P50579 478 aaKnown RBP eCLIP12.15□□□□□ -0.47
SRGAP3-207ENST00000485983 TAF12Q16514 161 aa12.15□□□□□ -0.47
SRGAP3-207ENST00000485983 ACSBG1Q96GR2 724 aa12.15□□□□□ -0.47
SRGAP3-207ENST00000485983 VEZTQ9HBM0 779 aa12.15□□□□□ -0.47
SRGAP3-207ENST00000485983 NOP2P46087 812 aaKnown RBP12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 AKNAQ7Z591 1439 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 NPHP3Q7Z494 1330 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 CASQ1P31415 396 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 MICU3Q86XE3 530 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 TCHPQ9BT92 498 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 PRPF4BQ13523 1007 aaKnown RBP12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 PLS1Q14651 629 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 DHX37Q8IY37 1157 aaKnown RBP12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 GRPEL1Q9HAV7 217 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 CYP7A1P22680 504 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 FBXO31Q5XUX0 539 aaPredicted RBP12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 CCDC144CPQ8IYA2 1237 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 CPLX3Q8WVH0 158 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 SSH1Q8WYL5 1049 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 PLVAPQ9BX97 442 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 ORC3Q9UBD5 711 aaPredicted RBP12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 PLEKHH1Q9ULM0 1364 aa12.14□□□□□ -0.47
SRGAP3-207ENST00000485983 TMTC2Q8N394 836 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 TBC1D5Q92609 795 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 DNMBPQ6XZF7 1577 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 KRT13P13646 458 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 RBM26Q5T8P6 1007 aaKnown RBP12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 FSIP1Q8NA03 581 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 SLC26A6Q9BXS9 759 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 IMPG2Q9BZV3 1241 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 KRT23Q9C075 422 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 PTPN14Q15678 1187 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 TMCO3Q6UWJ1 677 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 SMARCC2Q8TAQ2 1214 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 IKBKGQ9Y6K9 419 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 WTAPQ15007 396 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 TPTE2Q6XPS3 522 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 SHTN1A0MZ66 631 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 HAND2P61296 217 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 ZNF710Q8N1W2 664 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 ESR2Q92731 530 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 EYA3Q99504 573 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 C6orf50Q9HD87 102 aa12.13□□□□□ -0.47
SRGAP3-207ENST00000485983 ZFYP08048 801 aaPredicted RBP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 IFI16Q16666 785 aaKnown RBP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 PICALMQ13492 652 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 CCDC183Q5T5S1 534 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 CCDC117Q8IWD4 279 aaPredicted RBP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 RGS22Q8NE09 1264 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 DDX12PQ92771 950 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 EXOC1Q9NV70 894 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 HLTFQ14527 1009 aaKnown RBP eCLIP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 CEP63Q96MT8 703 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 NIP7Q9Y221 180 aaKnown RBP eCLIP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 RTCBQ9Y3I0 505 aaKnown RBP12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 PIK3R4Q99570 1358 aa12.12□□□□□ -0.47
SRGAP3-207ENST00000485983 IDI1Q13907 227 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms