RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 CHMP4AQ9BY43 222 aa21.48■■□□□ 1.03
TRIM54-203ENST00000485306 PRELPP51888 382 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 CRY2Q49AN0 593 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 CCDC93Q567U6 631 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 DPY19L2Q6NUT2 758 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 C7orf43Q8WVR3 580 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 RPGRQ92834 1020 aaKnown RBP21.47■■□□□ 1.03
TRIM54-203ENST00000485306 UTP14AQ9BVJ6 771 aaKnown RBP21.47■■□□□ 1.03
TRIM54-203ENST00000485306 HYPKQ9NX55 129 aa21.47■■□□□ 1.03
TRIM54-203ENST00000485306 GLTPD2A6NH11 291 aa21.46■■□□□ 1.03
TRIM54-203ENST00000485306 NTSR2O95665 410 aa21.46■■□□□ 1.03
TRIM54-203ENST00000485306 RRAGCQ9HB90 399 aa21.46■■□□□ 1.03
TRIM54-203ENST00000485306 TCIRG1Q13488 830 aa21.45■■□□□ 1.02
TRIM54-203ENST00000485306 WWC1Q8IX03 1113 aa21.45■■□□□ 1.02
TRIM54-203ENST00000485306 RTKN2Q8IZC4 609 aa21.45■■□□□ 1.02
TRIM54-203ENST00000485306 RBM17Q96I25 401 aaKnown RBP21.45■■□□□ 1.02
TRIM54-203ENST00000485306 NLRP3Q96P20 1036 aa21.45■■□□□ 1.02
TRIM54-203ENST00000485306 RIC1Q4ADV7 1423 aa21.45■■□□□ 1.02
TRIM54-203ENST00000485306 ANKRD13DQ6ZTN6 518 aa21.44■■□□□ 1.02
TRIM54-203ENST00000485306 PLBD2Q8NHP8 589 aa21.44■■□□□ 1.02
TRIM54-203ENST00000485306 DICER1Q9UPY3 1922 aaKnown RBP21.44■■□□□ 1.02
TRIM54-203ENST00000485306 RNF123Q5XPI4 1314 aa21.44■■□□□ 1.02
TRIM54-203ENST00000485306 ABCC12Q96J65 1359 aa21.44■■□□□ 1.02
TRIM54-203ENST00000485306 HSPA6P17066 643 aa21.43■■□□□ 1.02
TRIM54-203ENST00000485306 SLC10A5Q5PT55 438 aa21.43■■□□□ 1.02
TRIM54-203ENST00000485306 ELL2O00472 640 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-203ENST00000485306 HOXA10P31260 410 aaPredicted RBP21.42■■□□□ 1.02
TRIM54-203ENST00000485306 CC2D2BQ6DHV5 1058 aa21.42■■□□□ 1.02
TRIM54-203ENST00000485306 NLRP10Q86W26 655 aa21.42■■□□□ 1.02
TRIM54-203ENST00000485306 TNRC6CQ9HCJ0 1690 aaKnown RBP21.42■■□□□ 1.02
TRIM54-203ENST00000485306 ANKRD36CQ5JPF3 1778 aa21.41■■□□□ 1.02
TRIM54-203ENST00000485306 TIAM2Q8IVF5 1701 aa21.41■■□□□ 1.02
TRIM54-203ENST00000485306 VEGFAP15692 232 aaPredicted RBP21.41■■□□□ 1.02
TRIM54-203ENST00000485306 FKBP4Q02790 459 aaKnown RBP eCLIP21.41■■□□□ 1.02
TRIM54-203ENST00000485306 RBM46Q8TBY0 533 aaKnown RBP21.41■■□□□ 1.02
TRIM54-203ENST00000485306 CRAMP1Q96RY5 1269 aa21.41■■□□□ 1.02
TRIM54-203ENST00000485306 TRMT112Q9UI30 125 aaKnown RBP21.41■■□□□ 1.02
TRIM54-203ENST00000485306 GRIPAP1Q4V328 841 aa21.4■■□□□ 1.02
TRIM54-203ENST00000485306 TMX4Q9H1E5 349 aaPredicted RBP21.4■■□□□ 1.02
TRIM54-203ENST00000485306 SALL2Q9Y467 1007 aaPredicted RBP21.4■■□□□ 1.02
TRIM54-203ENST00000485306 IL16Q14005 1332 aa21.39■■□□□ 1.01
TRIM54-203ENST00000485306 SH3TC1Q8TE82 1336 aa21.38■■□□□ 1.01
TRIM54-203ENST00000485306 CCDC30Q5VVM6 783 aa21.38■■□□□ 1.01
TRIM54-203ENST00000485306 C8orf58Q8NAV2 365 aa21.38■■□□□ 1.01
TRIM54-203ENST00000485306 TSR2Q969E8 191 aaKnown RBP21.38■■□□□ 1.01
TRIM54-203ENST00000485306 GOLGA2Q08379 1002 aa21.37■■□□□ 1.01
TRIM54-203ENST00000485306 FSTL1Q12841 308 aa21.37■■□□□ 1.01
TRIM54-203ENST00000485306 OLFM4Q6UX06 510 aa21.37■■□□□ 1.01
TRIM54-203ENST00000485306 RIC3Q7Z5B4 369 aa21.37■■□□□ 1.01
TRIM54-203ENST00000485306 SYNE4Q8N205 404 aa21.37■■□□□ 1.01
TRIM54-203ENST00000485306 PSMD1Q99460 953 aa21.36■■□□□ 1.01
TRIM54-203ENST00000485306 ZNF277Q9NRM2 450 aaPredicted RBP21.36■■□□□ 1.01
TRIM54-203ENST00000485306 PPEF1O14829 653 aaPredicted RBP21.35■■□□□ 1.01
TRIM54-203ENST00000485306 HCLS1P14317 486 aaPredicted RBP21.35■■□□□ 1.01
TRIM54-203ENST00000485306 HNRNPUQ00839 825 aaKnown RBP eCLIP21.35■■□□□ 1.01
TRIM54-203ENST00000485306 C3orf67Q6ZVT6 689 aa21.35■■□□□ 1.01
TRIM54-203ENST00000485306 WDR63Q8IWG1 891 aa21.35■■□□□ 1.01
TRIM54-203ENST00000485306 ISCA1Q9BUE6 129 aa21.35■■□□□ 1.01
TRIM54-203ENST00000485306 ATP5J2-PTCD1G3V325 749 aa21.34■■□□□ 1.01
TRIM54-203ENST00000485306 DDX58O95786 925 aaKnown RBP21.34■■□□□ 1.01
TRIM54-203ENST00000485306 IARSP41252 1262 aaKnown RBP21.34■■□□□ 1.01
TRIM54-203ENST00000485306 APLP1P51693 650 aa21.34■■□□□ 1.01
TRIM54-203ENST00000485306 TRIM28Q13263 835 aaKnown RBP21.34■■□□□ 1.01
TRIM54-203ENST00000485306 DDX46Q7L014 1031 aaKnown RBP21.34■■□□□ 1.01
TRIM54-203ENST00000485306 SMC1BQ8NDV3 1235 aa21.34■■□□□ 1.01
TRIM54-203ENST00000485306 PHAXQ9H814 394 aaKnown RBP21.34■■□□□ 1.01
TRIM54-203ENST00000485306 TCERG1O14776 1098 aaKnown RBP21.33■■□□□ 1.01
TRIM54-203ENST00000485306 BBOX1O75936 387 aa21.33■■□□□ 1.01
TRIM54-203ENST00000485306 TSPYL6Q8N831 410 aa21.33■■□□□ 1.01
TRIM54-203ENST00000485306 JDP2Q8WYK2 163 aa21.33■■□□□ 1.01
TRIM54-203ENST00000485306 STK31Q9BXU1 1019 aa21.33■■□□□ 1.01
TRIM54-203ENST00000485306 DDNO94850 711 aaPredicted RBP21.32■■□□□ 1
TRIM54-203ENST00000485306 WDR90Q96KV7 1748 aa21.32■■□□□ 1
TRIM54-203ENST00000485306 FAM89AQ96GI7 184 aa21.31■■□□□ 1
TRIM54-203ENST00000485306 ATP6V0A2Q9Y487 856 aa21.31■■□□□ 1
TRIM54-203ENST00000485306 FANCIQ9NVI1 1328 aa21.3■■□□□ 1
TRIM54-203ENST00000485306 POTECB2RU33 542 aa21.3■■□□□ 1
TRIM54-203ENST00000485306 HSP90B1P14625 803 aaKnown RBP21.3■■□□□ 1
TRIM54-203ENST00000485306 TWISTNBQ3B726 338 aaPredicted RBP21.3■■□□□ 1
TRIM54-203ENST00000485306 ABCC4O15439 1325 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 ZBED9Q6R2W3 1325 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 LAMB2P55268 1798 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 IQCA1LA6NCM1 817 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 SP8Q8IXZ3 490 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 ZNF428Q96B54 188 aa21.29■■□□□ 1
TRIM54-203ENST00000485306 GRAPQ13588 217 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 TMC4Q7Z404 712 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 CCDC191Q8NCU4 936 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 SUPT20HQ8NEM7 779 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 GRAPLQ8TC17 118 aaPredicted RBP21.28■■□□□ 1
TRIM54-203ENST00000485306 MYD88Q99836 296 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 VPS33BQ9H267 617 aa21.28■■□□□ 1
TRIM54-203ENST00000485306 SPINK5Q9NQ38 1064 aaPredicted RBP21.28■■□□□ 1
TRIM54-203ENST00000485306 FZD9O00144 591 aa21.27■■□□□ 1
TRIM54-203ENST00000485306 LARGE2Q8N3Y3 721 aa21.27■■□□□ 1
TRIM54-203ENST00000485306 ZBTB38Q8NAP3 1195 aaPredicted RBP21.27■■□□□ 1
TRIM54-203ENST00000485306 SNED1Q8TER0 1413 aa21.27■■□□□ 1
TRIM54-203ENST00000485306 ZNF521Q96K83 1311 aa21.27■□□□□ 0.99
TRIM54-203ENST00000485306 IRS4O14654 1257 aaPredicted RBP21.26■□□□□ 0.99
TRIM54-203ENST00000485306 EIF6P56537 245 aaKnown RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms