RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SPDYE3A6NKU9 549 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 FAM196BA6NMK8 535 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 PPP1R12BO60237 982 aaPredicted RBP6.95□□□□□ -1.3
VPS50-216ENST00000484954 PSMA6P60900 246 aaKnown RBP6.95□□□□□ -1.3
VPS50-216ENST00000484954 LRP8Q14114 963 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 GRIK4Q16099 956 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 FAM182BQ5T319 152 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 ZNF468Q5VIY5 522 aaPredicted RBP6.95□□□□□ -1.3
VPS50-216ENST00000484954 POTEAQ6S8J7 498 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 BICDL1Q6ZP65 573 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 ANKMY2Q8IV38 441 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 SCG3Q8WXD2 468 aaKnown RBP6.95□□□□□ -1.3
VPS50-216ENST00000484954 STRN4Q9NRL3 753 aa6.95□□□□□ -1.3
VPS50-216ENST00000484954 HYAL3O43820 417 aaPredicted RBP6.94□□□□□ -1.3
VPS50-216ENST00000484954 LRRC69Q6ZNQ3 347 aa6.94□□□□□ -1.3
VPS50-216ENST00000484954 RBM19Q9Y4C8 960 aaKnown RBP6.94□□□□□ -1.3
VPS50-216ENST00000484954 ATAD2Q6PL18 1390 aa6.94□□□□□ -1.3
VPS50-216ENST00000484954 ELOA3CA0A087WX78 387 aaPredicted RBP6.93□□□□□ -1.3
VPS50-216ENST00000484954 ELOA3DA6NLF2 546 aaPredicted RBP6.93□□□□□ -1.3
VPS50-216ENST00000484954 ALAS2P22557 587 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 TRIM28Q13263 835 aaKnown RBP6.93□□□□□ -1.3
VPS50-216ENST00000484954 ELOA3BQ3SY89 546 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 C8orf86Q6ZUL3 223 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 ELOA3Q8NG57 546 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 CHMP7Q8WUX9 453 aaPredicted RBP6.93□□□□□ -1.3
VPS50-216ENST00000484954 HSH2DQ96JZ2 352 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 HINFPQ9BQA5 517 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 PHACTR1Q9C0D0 580 aa6.93□□□□□ -1.3
VPS50-216ENST00000484954 ARID1BQ8NFD5 2236 aaPredicted RBP6.93□□□□□ -1.3
VPS50-216ENST00000484954 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.92□□□□□ -1.3
VPS50-216ENST00000484954 M0R082 166 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 HIRAP54198 1017 aaPredicted RBP6.92□□□□□ -1.3
VPS50-216ENST00000484954 SRPK2P78362 688 aaKnown RBP6.92□□□□□ -1.3
VPS50-216ENST00000484954 SYT9Q86SS6 491 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 ZNF280CQ8ND82 737 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 ZNF417Q8TAU3 575 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 ZNF587Q96SQ5 575 aaPredicted RBP6.92□□□□□ -1.3
VPS50-216ENST00000484954 C2orf49Q9BVC5 232 aaPredicted RBP6.92□□□□□ -1.3
VPS50-216ENST00000484954 MARK1Q9P0L2 795 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 GJA3Q9Y6H8 435 aa6.92□□□□□ -1.3
VPS50-216ENST00000484954 EFSO43281 561 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 FAM157BP0CG42 384 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 SAMD5Q5TGI4 173 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 RHPN1Q8TCX5 695 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 NACC1Q96RE7 527 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 ZMIZ1Q9ULJ6 1067 aa6.91□□□□□ -1.3
VPS50-216ENST00000484954 ALDH16A1Q8IZ83 802 aa6.9□□□□□ -1.3
VPS50-216ENST00000484954 NGLY1Q96IV0 654 aa6.9□□□□□ -1.3
VPS50-216ENST00000484954 NOVA2Q9UNW9 492 aaKnown RBP6.9□□□□□ -1.3
VPS50-216ENST00000484954 SFSWAPQ12872 951 aaKnown RBP6.89□□□□□ -1.31
VPS50-216ENST00000484954 COL9A3Q14050 684 aaPredicted RBP6.89□□□□□ -1.31
VPS50-216ENST00000484954 C1orf53Q5VUE5 145 aa6.89□□□□□ -1.31
VPS50-216ENST00000484954 STK32AQ8WU08 396 aa6.89□□□□□ -1.31
VPS50-216ENST00000484954 C1orf115Q9H7X2 142 aa6.89□□□□□ -1.31
VPS50-216ENST00000484954 ALBP02768 609 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 WEE1P30291 646 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 STAG2Q8N3U4 1231 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 FAM200AQ8TCP9 573 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 SUSD3Q96L08 255 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 CHMP3Q9Y3E7 222 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 STARD13Q9Y3M8 1113 aa6.88□□□□□ -1.31
VPS50-216ENST00000484954 IGFBP4P22692 258 aa6.87□□□□□ -1.31
VPS50-216ENST00000484954 FAM69CQ0P6D2 419 aa6.87□□□□□ -1.31
VPS50-216ENST00000484954 SLC30A3Q99726 388 aa6.87□□□□□ -1.31
VPS50-216ENST00000484954 BCS1LQ9Y276 419 aa6.87□□□□□ -1.31
VPS50-216ENST00000484954 GPC6Q9Y625 555 aaPredicted RBP6.87□□□□□ -1.31
VPS50-216ENST00000484954 H2AFB1P0C5Y9 115 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 H2AFB2P0C5Z0 115 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 TRAPPC3LQ5T215 181 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 MICALL1Q8N3F8 863 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 TP53INP1Q96A56 240 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 PRIMPOLQ96LW4 560 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 MDFIQ99750 246 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 NEUROD4Q9HD90 331 aa6.86□□□□□ -1.31
VPS50-216ENST00000484954 C9orf172C9J069 976 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 TYRO3Q06418 890 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 ADGRE1Q14246 886 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 MBTPS1Q14703 1052 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 RAB44Q7Z6P3 723 aaPredicted RBP6.85□□□□□ -1.31
VPS50-216ENST00000484954 CEP63Q96MT8 703 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 QTRT2Q9H974 415 aaKnown RBP6.85□□□□□ -1.31
VPS50-216ENST00000484954 KLK14Q9P0G3 267 aa6.85□□□□□ -1.31
VPS50-216ENST00000484954 PRMT3O60678 531 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 NID1P14543 1247 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 SELPP16109 830 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 FKBP5Q13451 457 aaPredicted RBP6.84□□□□□ -1.31
VPS50-216ENST00000484954 CCDC82Q8N4S0 544 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 CCDC97Q96F63 343 aaPredicted RBP6.84□□□□□ -1.31
VPS50-216ENST00000484954 BRD7Q9NPI1 651 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 SLAIN2Q9P270 581 aa6.84□□□□□ -1.31
VPS50-216ENST00000484954 ACIN1Q9UKV3 1341 aaKnown RBP6.83□□□□□ -1.32
VPS50-216ENST00000484954 ADARB2-AS1A8MUL3 147 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 SIN3BO75182 1162 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 ATG7O95352 703 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 GRNP28799 593 aaKnown RBP6.83□□□□□ -1.32
VPS50-216ENST00000484954 LAMC2Q13753 1193 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 ELOAQ14241 798 aaKnown RBP6.83□□□□□ -1.32
VPS50-216ENST00000484954 OCLNQ16625 522 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 RTN1Q16799 776 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 TMEM164Q5U3C3 297 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms