RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 LRRC37A3O60309 1634 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 HTATSF1O43719 755 aaKnown RBP15.78■□□□□ 0.12
USP40-214ENST00000483519 CCDC186Q7Z3E2 898 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 PPP1R42Q7Z4L9 355 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 SPG7Q9UQ90 795 aa15.78■□□□□ 0.12
USP40-214ENST00000483519 LUZP1Q86V48 1076 aa15.77■□□□□ 0.12
USP40-214ENST00000483519 C16orf45Q96MC5 204 aaPredicted RBP15.77■□□□□ 0.12
USP40-214ENST00000483519 TNMDQ9H2S6 317 aa15.77■□□□□ 0.12
USP40-214ENST00000483519 ZSWIM6Q9HCJ5 1215 aa15.77■□□□□ 0.12
USP40-214ENST00000483519 C1orf167Q5SNV9 1468 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 CPA1P15085 419 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 PDCP20941 246 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 HSP90AB4PQ58FF6 505 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 TTC6Q86TZ1 520 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 TTC41PQ6P2S7 1318 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 PRR36Q9H6K5 1346 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 KDRP35968 1356 aa15.77■□□□□ 0.11
USP40-214ENST00000483519 GABPB1Q06547 395 aaPredicted RBP15.76■□□□□ 0.11
USP40-214ENST00000483519 DDX19AQ9NUU7 478 aaKnown RBP15.76■□□□□ 0.11
USP40-214ENST00000483519 GOLGA6L4A6NEF3 574 aa15.76■□□□□ 0.11
USP40-214ENST00000483519 GLRX3O76003 335 aaKnown RBP15.76■□□□□ 0.11
USP40-214ENST00000483519 TNNT1P13805 278 aa15.76■□□□□ 0.11
USP40-214ENST00000483519 LARP1BQ659C4 914 aaKnown RBP15.76■□□□□ 0.11
USP40-214ENST00000483519 CCDC112Q8NEF3 446 aa15.76■□□□□ 0.11
USP40-214ENST00000483519 USP42Q9H9J4 1324 aaKnown RBP15.76■□□□□ 0.11
USP40-214ENST00000483519 ANO6Q4KMQ2 910 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 PLA2G4DQ86XP0 818 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 NECTIN2Q92692 538 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 TRIM5Q9C035 493 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 SCAND2PQ9GZW5 306 aaPredicted RBP15.75■□□□□ 0.11
USP40-214ENST00000483519 CBX8Q9HC52 389 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 CTNNA3Q9UI47 895 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 PHRF1Q9P1Y6 1649 aaKnown RBP15.75■□□□□ 0.11
USP40-214ENST00000483519 SRGAP3O43295 1099 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 ZKSCAN1P17029 563 aaPredicted RBP15.75■□□□□ 0.11
USP40-214ENST00000483519 ZNF75DP51815 510 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 CAMK4Q16566 473 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 ZSCAN25Q6NSZ9 544 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 KCNB2Q92953 911 aa15.75■□□□□ 0.11
USP40-214ENST00000483519 LIG1P18858 919 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 PRPF40BQ6NWY9 871 aaKnown RBP15.74■□□□□ 0.11
USP40-214ENST00000483519 ZNF771Q7L3S4 317 aaPredicted RBP15.74■□□□□ 0.11
USP40-214ENST00000483519 FBXO41Q8TF61 875 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 NPHP3Q7Z494 1330 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 LRMPQ12912 555 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 ME3Q16798 604 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 TDRD7Q8NHU6 1098 aaKnown RBP15.74■□□□□ 0.11
USP40-214ENST00000483519 CHMP3Q9Y3E7 222 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 FLT4P35916 1363 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 PIP4K2BP78356 416 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 ADCK5Q3MIX3 580 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 DACT1Q9NYF0 836 aa15.74■□□□□ 0.11
USP40-214ENST00000483519 ACEP12821 1306 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 NUTM2FA1L443 756 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 CAVIN2O95810 425 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 ST3GAL1Q11201 340 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 TPD52L1Q16890 204 aaPredicted RBP15.73■□□□□ 0.11
USP40-214ENST00000483519 ESCO1Q5FWF5 840 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 RBM43Q6ZSC3 357 aaKnown RBP15.73■□□□□ 0.11
USP40-214ENST00000483519 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.73■□□□□ 0.11
USP40-214ENST00000483519 DDX41Q9UJV9 622 aaKnown RBP15.73■□□□□ 0.11
USP40-214ENST00000483519 SBNO1A3KN83 1393 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 PAXIP1Q6ZW49 1069 aaPredicted RBP15.73■□□□□ 0.11
USP40-214ENST00000483519 CKAP2LQ8IYA6 745 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 BABAM1Q9NWV8 329 aa15.73■□□□□ 0.11
USP40-214ENST00000483519 CDC25BP30305 580 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 PTH1RQ03431 593 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 CDC37L1Q7L3B6 337 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 GPATCH3Q96I76 525 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 CLSTN2Q9H4D0 955 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 IGSF1Q8N6C5 1336 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 GNAT3A8MTJ3 354 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 PSMA5P28066 241 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 NECAB1Q8N987 351 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 SPATA32Q96LK8 384 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 CLIP2Q9UDT6 1046 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 PHF8Q9UPP1 1060 aa15.72■□□□□ 0.11
USP40-214ENST00000483519 A0A0U1RQG5 324 aaPredicted RBP15.71■□□□□ 0.11
USP40-214ENST00000483519 BRINP3Q76B58 766 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 NRBP1Q9UHY1 535 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 MARF1Q9Y4F3 1742 aaKnown RBP15.71■□□□□ 0.11
USP40-214ENST00000483519 ZBTB22O15209 634 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 SOX12O15370 315 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 ZNF165P49910 485 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 OS9Q13438 667 aaPredicted RBP15.71■□□□□ 0.11
USP40-214ENST00000483519 NECTIN1Q15223 517 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 ANKRD1Q15327 319 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 HDGFL1Q5TGJ6 251 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 FERMT3Q86UX7 667 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 TPCN1Q9ULQ1 816 aa15.71■□□□□ 0.11
USP40-214ENST00000483519 KIF1AQ12756 1690 aa15.71■□□□□ 0.1
USP40-214ENST00000483519 NEMFO60524 1076 aa15.7■□□□□ 0.1
USP40-214ENST00000483519 CEP135Q66GS9 1140 aa15.7■□□□□ 0.1
USP40-214ENST00000483519 CLASRPQ8N2M8 674 aaKnown RBP15.7■□□□□ 0.1
USP40-214ENST00000483519 MORC2Q9Y6X9 1032 aaPredicted RBP15.7■□□□□ 0.1
USP40-214ENST00000483519 KCNJ4P48050 445 aa15.7■□□□□ 0.1
USP40-214ENST00000483519 ORAI2Q96SN7 254 aa15.7■□□□□ 0.1
USP40-214ENST00000483519 HSP90B1P14625 803 aaKnown RBP15.69■□□□□ 0.1
USP40-214ENST00000483519 PIK3C2AO00443 1686 aa15.69■□□□□ 0.1
USP40-214ENST00000483519 ROBO1Q9Y6N7 1651 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms