RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 E9PSI1 815 aa23.15■■□□□ 1.3
HDAC6-225ENST00000483506 GTF2E1P29083 439 aaPredicted RBP23.15■■□□□ 1.3
HDAC6-225ENST00000483506 TRIM28Q13263 835 aaKnown RBP23.15■■□□□ 1.3
HDAC6-225ENST00000483506 CRY2Q49AN0 593 aa23.15■■□□□ 1.3
HDAC6-225ENST00000483506 SLC10A5Q5PT55 438 aa23.14■■□□□ 1.29
HDAC6-225ENST00000483506 CNKSR1Q969H4 720 aa23.14■■□□□ 1.29
HDAC6-225ENST00000483506 DDX58O95786 925 aaKnown RBP23.13■■□□□ 1.29
HDAC6-225ENST00000483506 NPR1P16066 1061 aa23.13■■□□□ 1.29
HDAC6-225ENST00000483506 ZNF622Q969S3 477 aaKnown RBP eCLIP23.13■■□□□ 1.29
HDAC6-225ENST00000483506 ADCY9O60503 1353 aa23.13■■□□□ 1.29
HDAC6-225ENST00000483506 SLX4Q8IY92 1834 aa23.12■■□□□ 1.29
HDAC6-225ENST00000483506 SLC4A2P04920 1241 aa23.12■■□□□ 1.29
HDAC6-225ENST00000483506 SLFN5Q08AF3 891 aa23.12■■□□□ 1.29
HDAC6-225ENST00000483506 RIC3Q7Z5B4 369 aa23.12■■□□□ 1.29
HDAC6-225ENST00000483506 CACNA1SQ13698 1873 aa23.11■■□□□ 1.29
HDAC6-225ENST00000483506 ARHGAP27Q6ZUM4 889 aa23.11■■□□□ 1.29
HDAC6-225ENST00000483506 TCERG1O14776 1098 aaKnown RBP23.1■■□□□ 1.29
HDAC6-225ENST00000483506 KSR2Q6VAB6 950 aa23.1■■□□□ 1.29
HDAC6-225ENST00000483506 TRMT2AQ8IZ69 625 aaKnown RBP23.1■■□□□ 1.29
HDAC6-225ENST00000483506 METTL22Q9BUU2 404 aaPredicted RBP23.1■■□□□ 1.29
HDAC6-225ENST00000483506 SH3TC1Q8TE82 1336 aa23.09■■□□□ 1.29
HDAC6-225ENST00000483506 LAMB2P55268 1798 aa23.09■■□□□ 1.29
HDAC6-225ENST00000483506 HOXA10P31260 410 aaPredicted RBP23.09■■□□□ 1.29
HDAC6-225ENST00000483506 PRPF40BQ6NWY9 871 aaKnown RBP23.09■■□□□ 1.29
HDAC6-225ENST00000483506 G2E3Q7L622 706 aa23.09■■□□□ 1.29
HDAC6-225ENST00000483506 TRMT112Q9UI30 125 aaKnown RBP23.09■■□□□ 1.29
HDAC6-225ENST00000483506 FER1L6Q2WGJ9 1857 aa23.09■■□□□ 1.29
HDAC6-225ENST00000483506 DDX60Q8IY21 1712 aaKnown RBP23.08■■□□□ 1.29
HDAC6-225ENST00000483506 ATP5J2-PTCD1G3V325 749 aa23.08■■□□□ 1.29
HDAC6-225ENST00000483506 FLIIQ13045 1269 aa23.08■■□□□ 1.29
HDAC6-225ENST00000483506 SBF1O95248 1867 aa23.08■■□□□ 1.29
HDAC6-225ENST00000483506 PI4KAP2A4QPH2 592 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 C3orf67Q6ZVT6 689 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 PI4KAP1Q8N8J0 262 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 CCDC191Q8NCU4 936 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 C7orf43Q8WVR3 580 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 MAP3K2Q9Y2U5 619 aa23.07■■□□□ 1.28
HDAC6-225ENST00000483506 ALDH1B1P30837 517 aa23.06■■□□□ 1.28
HDAC6-225ENST00000483506 CDCA7LQ96GN5 454 aa23.06■■□□□ 1.28
HDAC6-225ENST00000483506 NLRP3Q96P20 1036 aa23.06■■□□□ 1.28
HDAC6-225ENST00000483506 MYD88Q99836 296 aa23.06■■□□□ 1.28
HDAC6-225ENST00000483506 SOGA3Q5TF21 947 aa23.05■■□□□ 1.28
HDAC6-225ENST00000483506 SYNE4Q8N205 404 aa23.05■■□□□ 1.28
HDAC6-225ENST00000483506 ZNF784Q8NCA9 323 aaPredicted RBP23.05■■□□□ 1.28
HDAC6-225ENST00000483506 C21orf2O43822 256 aa23.04■■□□□ 1.28
HDAC6-225ENST00000483506 RPGRQ92834 1020 aaKnown RBP23.04■■□□□ 1.28
HDAC6-225ENST00000483506 ZNF428Q96B54 188 aa23.04■■□□□ 1.28
HDAC6-225ENST00000483506 CRAMP1Q96RY5 1269 aa23.04■■□□□ 1.28
HDAC6-225ENST00000483506 NFKBIEO00221 500 aa23.03■■□□□ 1.28
HDAC6-225ENST00000483506 ZBTB38Q8NAP3 1195 aaPredicted RBP23.03■■□□□ 1.28
HDAC6-225ENST00000483506 CWC25Q9NXE8 425 aaPredicted RBP23.03■■□□□ 1.28
HDAC6-225ENST00000483506 LTBP3Q9NS15 1303 aa23.03■■□□□ 1.28
HDAC6-225ENST00000483506 SNED1Q8TER0 1413 aa23.02■■□□□ 1.28
HDAC6-225ENST00000483506 IGKV5-2P06315 115 aa23.02■■□□□ 1.28
HDAC6-225ENST00000483506 HCLS1P14317 486 aaPredicted RBP23.02■■□□□ 1.28
HDAC6-225ENST00000483506 FKBP5Q13451 457 aaPredicted RBP23.02■■□□□ 1.28
HDAC6-225ENST00000483506 FAM89AQ96GI7 184 aa23.02■■□□□ 1.28
HDAC6-225ENST00000483506 RBM17Q96I25 401 aaKnown RBP23.02■■□□□ 1.28
HDAC6-225ENST00000483506 PCCAP05165 728 aaPredicted RBP23.01■■□□□ 1.27
HDAC6-225ENST00000483506 NEXNQ0ZGT2 675 aa23.01■■□□□ 1.27
HDAC6-225ENST00000483506 CT47B1P0C2W7 299 aaPredicted RBP23■■□□□ 1.27
HDAC6-225ENST00000483506 RASSF7Q02833 373 aa23■■□□□ 1.27
HDAC6-225ENST00000483506 C9orf131Q5VYM1 1079 aa23■■□□□ 1.27
HDAC6-225ENST00000483506 DNAAF4Q8WXU2 420 aa23■■□□□ 1.27
HDAC6-225ENST00000483506 NEURL1BA8MQ27 555 aa22.99■■□□□ 1.27
HDAC6-225ENST00000483506 IRS4O14654 1257 aaPredicted RBP22.99■■□□□ 1.27
HDAC6-225ENST00000483506 LMNB1P20700 586 aa22.99■■□□□ 1.27
HDAC6-225ENST00000483506 PRELPP51888 382 aa22.99■■□□□ 1.27
HDAC6-225ENST00000483506 SF3B3Q15393 1217 aaKnown RBP22.99■■□□□ 1.27
HDAC6-225ENST00000483506 CCDC93Q567U6 631 aa22.99■■□□□ 1.27
HDAC6-225ENST00000483506 DICER1Q9UPY3 1922 aaKnown RBP22.98■■□□□ 1.27
HDAC6-225ENST00000483506 HSP90B1P14625 803 aaKnown RBP22.98■■□□□ 1.27
HDAC6-225ENST00000483506 ZNF219Q9P2Y4 722 aaPredicted RBP22.98■■□□□ 1.27
HDAC6-225ENST00000483506 ABCC4O15439 1325 aa22.98■■□□□ 1.27
HDAC6-225ENST00000483506 CDHR2Q9BYE9 1310 aa22.98■■□□□ 1.27
HDAC6-225ENST00000483506 ZC3H4Q9UPT8 1303 aaKnown RBP22.98■■□□□ 1.27
HDAC6-225ENST00000483506 CCDC88AQ3V6T2 1871 aa22.98■■□□□ 1.27
HDAC6-225ENST00000483506 CC2D2BQ6DHV5 1058 aa22.97■■□□□ 1.27
HDAC6-225ENST00000483506 TAOK3Q9H2K8 898 aa22.97■■□□□ 1.27
HDAC6-225ENST00000483506 RNF181Q9P0P0 153 aa22.97■■□□□ 1.27
HDAC6-225ENST00000483506 CWF19L2Q2TBE0 894 aaKnown RBP22.96■■□□□ 1.27
HDAC6-225ENST00000483506 ALDH1L2Q3SY69 923 aa22.96■■□□□ 1.27
HDAC6-225ENST00000483506 RTKN2Q8IZC4 609 aa22.96■■□□□ 1.27
HDAC6-225ENST00000483506 MRPL50Q8N5N7 158 aaKnown RBP22.96■■□□□ 1.27
HDAC6-225ENST00000483506 LINS1Q8NG48 757 aa22.96■■□□□ 1.27
HDAC6-225ENST00000483506 TIAM2Q8IVF5 1701 aa22.96■■□□□ 1.27
HDAC6-225ENST00000483506 PPEF1O14829 653 aaPredicted RBP22.95■■□□□ 1.26
HDAC6-225ENST00000483506 HNRNPUQ00839 825 aaKnown RBP eCLIP22.95■■□□□ 1.26
HDAC6-225ENST00000483506 GRIPAP1Q4V328 841 aa22.95■■□□□ 1.26
HDAC6-225ENST00000483506 SSH1Q8WYL5 1049 aa22.95■■□□□ 1.26
HDAC6-225ENST00000483506 GRAPQ13588 217 aa22.94■■□□□ 1.26
HDAC6-225ENST00000483506 GCKRQ14397 625 aa22.94■■□□□ 1.26
HDAC6-225ENST00000483506 RTL5Q5HYW3 569 aaPredicted RBP22.94■■□□□ 1.26
HDAC6-225ENST00000483506 OLFM4Q6UX06 510 aa22.94■■□□□ 1.26
HDAC6-225ENST00000483506 DDX46Q7L014 1031 aaKnown RBP22.94■■□□□ 1.26
HDAC6-225ENST00000483506 GRAPLQ8TC17 118 aaPredicted RBP22.94■■□□□ 1.26
HDAC6-225ENST00000483506 LRRC37AA6NMS7 1700 aa22.94■■□□□ 1.26
HDAC6-225ENST00000483506 MYH3P11055 1940 aa22.93■■□□□ 1.26
HDAC6-225ENST00000483506 F6X3S4 739 aa22.93■■□□□ 1.26
HDAC6-225ENST00000483506 H7C1W4 665 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms