RNA–Protein interactions for RNA: ENST00000483128.1

SHANK1-207, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 780 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-207ENST00000483128 ELL2O00472 640 aaPredicted RBP18.25■□□□□ 0.51
SHANK1-207ENST00000483128 HOXB7P09629 217 aa18.25■□□□□ 0.51
SHANK1-207ENST00000483128 ZNF853P0CG23 659 aa18.25■□□□□ 0.51
SHANK1-207ENST00000483128 CALD1Q05682 793 aaKnown RBP18.25■□□□□ 0.51
SHANK1-207ENST00000483128 C3orf67Q6ZVT6 689 aa18.25■□□□□ 0.51
SHANK1-207ENST00000483128 RBM46Q8TBY0 533 aaKnown RBP18.25■□□□□ 0.51
SHANK1-207ENST00000483128 IFT57Q9NWB7 429 aa18.25■□□□□ 0.51
SHANK1-207ENST00000483128 TCERG1O14776 1098 aaKnown RBP18.24■□□□□ 0.51
SHANK1-207ENST00000483128 VEGFAP15692 232 aaPredicted RBP18.24■□□□□ 0.51
SHANK1-207ENST00000483128 GNAI1P63096 354 aa18.24■□□□□ 0.51
SHANK1-207ENST00000483128 HSP90AB3PQ58FF7 597 aa18.24■□□□□ 0.51
SHANK1-207ENST00000483128 ZNF277Q9NRM2 450 aaPredicted RBP18.24■□□□□ 0.51
SHANK1-207ENST00000483128 DBF4Q9UBU7 674 aaPredicted RBP18.24■□□□□ 0.51
SHANK1-207ENST00000483128 DICER1Q9UPY3 1922 aaKnown RBP18.23■□□□□ 0.51
SHANK1-207ENST00000483128 ANP32CO43423 234 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 FKBP4Q02790 459 aaKnown RBP eCLIP18.23■□□□□ 0.51
SHANK1-207ENST00000483128 TCIRG1Q13488 830 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 NLRP10Q86W26 655 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 RTKN2Q8IZC4 609 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 SYNE4Q8N205 404 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 NLRP3Q96P20 1036 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 MRS2Q9HD23 443 aa18.23■□□□□ 0.51
SHANK1-207ENST00000483128 HOXA10P31260 410 aaPredicted RBP18.22■□□□□ 0.51
SHANK1-207ENST00000483128 ANKRD13DQ6ZTN6 518 aa18.22■□□□□ 0.51
SHANK1-207ENST00000483128 RBM17Q96I25 401 aaKnown RBP18.22■□□□□ 0.51
SHANK1-207ENST00000483128 TRMT112Q9UI30 125 aaKnown RBP18.22■□□□□ 0.51
SHANK1-207ENST00000483128 CEP350Q5VT06 3117 aa18.22■□□□□ 0.51
SHANK1-207ENST00000483128 DDNO94850 711 aaPredicted RBP18.21■□□□□ 0.51
SHANK1-207ENST00000483128 HCLS1P14317 486 aaPredicted RBP18.21■□□□□ 0.51
SHANK1-207ENST00000483128 SLC10A5Q5PT55 438 aa18.21■□□□□ 0.51
SHANK1-207ENST00000483128 SLC51AQ86UW1 340 aa18.21■□□□□ 0.51
SHANK1-207ENST00000483128 PLBD2Q8NHP8 589 aa18.21■□□□□ 0.51
SHANK1-207ENST00000483128 HYPKQ9NX55 129 aa18.21■□□□□ 0.51
SHANK1-207ENST00000483128 RIC1Q4ADV7 1423 aa18.21■□□□□ 0.51
SHANK1-207ENST00000483128 ANKRD36CQ5JPF3 1778 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 POTECB2RU33 542 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 APLP1P51693 650 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 FSTL1Q12841 308 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 C8orf58Q8NAV2 365 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 CRAMP1Q96RY5 1269 aa18.2■□□□□ 0.5
SHANK1-207ENST00000483128 ATP5J2-PTCD1G3V325 749 aa18.19■□□□□ 0.5
SHANK1-207ENST00000483128 PPEF1O14829 653 aaPredicted RBP18.19■□□□□ 0.5
SHANK1-207ENST00000483128 SMC1BQ8NDV3 1235 aa18.19■□□□□ 0.5
SHANK1-207ENST00000483128 IARSP41252 1262 aaKnown RBP18.18■□□□□ 0.5
SHANK1-207ENST00000483128 PHAXQ9H814 394 aaKnown RBP18.18■□□□□ 0.5
SHANK1-207ENST00000483128 SH3TC1Q8TE82 1336 aa18.18■□□□□ 0.5
SHANK1-207ENST00000483128 HTRA3P83110 453 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 CC2D2BQ6DHV5 1058 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 RIC3Q7Z5B4 369 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 TSR2Q969E8 191 aaKnown RBP18.17■□□□□ 0.5
SHANK1-207ENST00000483128 PSMD1Q99460 953 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 SALL2Q9Y467 1007 aaPredicted RBP18.17■□□□□ 0.5
SHANK1-207ENST00000483128 WDR90Q96KV7 1748 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 RNF123Q5XPI4 1314 aa18.17■□□□□ 0.5
SHANK1-207ENST00000483128 RTL5Q5HYW3 569 aaPredicted RBP18.16■□□□□ 0.5
SHANK1-207ENST00000483128 WWC1Q8IX03 1113 aa18.16■□□□□ 0.5
SHANK1-207ENST00000483128 TSPYL6Q8N831 410 aa18.16■□□□□ 0.5
SHANK1-207ENST00000483128 ISCA1Q9BUE6 129 aa18.16■□□□□ 0.5
SHANK1-207ENST00000483128 ABCC4O15439 1325 aa18.16■□□□□ 0.5
SHANK1-207ENST00000483128 ZNF541Q9H0D2 1346 aa18.16■□□□□ 0.5
SHANK1-207ENST00000483128 SNED1Q8TER0 1413 aa18.15■□□□□ 0.5
SHANK1-207ENST00000483128 GOLGA2Q08379 1002 aa18.15■□□□□ 0.5
SHANK1-207ENST00000483128 FAM89AQ96GI7 184 aa18.15■□□□□ 0.5
SHANK1-207ENST00000483128 TMX4Q9H1E5 349 aaPredicted RBP18.15■□□□□ 0.5
SHANK1-207ENST00000483128 CCDC27Q2M243 656 aa18.14■□□□□ 0.49
SHANK1-207ENST00000483128 DDX46Q7L014 1031 aaKnown RBP18.14■□□□□ 0.49
SHANK1-207ENST00000483128 JDP2Q8WYK2 163 aa18.14■□□□□ 0.49
SHANK1-207ENST00000483128 LAMB2P55268 1798 aa18.13■□□□□ 0.49
SHANK1-207ENST00000483128 POTEIP0CG38 1075 aa18.13■□□□□ 0.49
SHANK1-207ENST00000483128 POTEJP0CG39 1038 aa18.13■□□□□ 0.49
SHANK1-207ENST00000483128 CCDC30Q5VVM6 783 aa18.13■□□□□ 0.49
SHANK1-207ENST00000483128 ATP6V0A2Q9Y487 856 aa18.13■□□□□ 0.49
SHANK1-207ENST00000483128 FZD9O00144 591 aa18.12■□□□□ 0.49
SHANK1-207ENST00000483128 BBOX1O75936 387 aa18.12■□□□□ 0.49
SHANK1-207ENST00000483128 GRIPAP1Q4V328 841 aa18.12■□□□□ 0.49
SHANK1-207ENST00000483128 LARGE2Q8N3Y3 721 aa18.12■□□□□ 0.49
SHANK1-207ENST00000483128 MYD88Q99836 296 aa18.12■□□□□ 0.49
SHANK1-207ENST00000483128 IQCA1LA6NCM1 817 aa18.11■□□□□ 0.49
SHANK1-207ENST00000483128 DNAJC5GQ8N7S2 189 aa18.11■□□□□ 0.49
SHANK1-207ENST00000483128 TAF1P21675 1872 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 IRS4O14654 1257 aaPredicted RBP18.1■□□□□ 0.49
SHANK1-207ENST00000483128 TRIM28Q13263 835 aaKnown RBP18.1■□□□□ 0.49
SHANK1-207ENST00000483128 GRAPQ13588 217 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 SP8Q8IXZ3 490 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 FAM9BQ8IZU0 186 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 GRAPLQ8TC17 118 aaPredicted RBP18.1■□□□□ 0.49
SHANK1-207ENST00000483128 L3MBTL3Q96JM7 780 aaPredicted RBP18.1■□□□□ 0.49
SHANK1-207ENST00000483128 CHMP4AQ9BY43 222 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 GJA3Q9Y6H8 435 aa18.1■□□□□ 0.49
SHANK1-207ENST00000483128 COL4A5P29400 1685 aa18.09■□□□□ 0.49
SHANK1-207ENST00000483128 PPIP5K2O43314 1243 aa18.09■□□□□ 0.49
SHANK1-207ENST00000483128 DDX58O95786 925 aaKnown RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 EIF6P56537 245 aaKnown RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 AOC3Q16853 763 aa18.09■□□□□ 0.49
SHANK1-207ENST00000483128 TWISTNBQ3B726 338 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 EAPPQ56P03 285 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 JARID2Q92833 1246 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 TAF1DQ9H5J8 278 aaPredicted RBP18.09■□□□□ 0.49
SHANK1-207ENST00000483128 IL16Q14005 1332 aa18.08■□□□□ 0.49
SHANK1-207ENST00000483128 CHADLQ6NUI6 762 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms