RNA–Protein interactions for RNA: ENST00000483122.1

VTI1A-205, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 4

Gene VTI1A, Length 2,423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-205	ENST00000483122	MIS18A	Q9NYP9	233 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	TFIP11	Q9UBB9	837 aa	Known RBP	13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	TTC21A	Q8NDW8	1320 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	NR1I2	O75469	434 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	PLA2G4A	P47712	749 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	CCZ1B	P86790	482 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	CCZ1	P86791	482 aa	Predicted RBP	13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	ME3	Q16798	604 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	PDRG1	Q9NUG6	133 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	TBX22	Q9Y458	520 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	ELP1	O95163	1332 aa		13.95	□□□□□ -0.18
VTI1A-205	ENST00000483122	CLCN6	P51797	869 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	TAF7L	Q5H9L4	462 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	LARP1B	Q659C4	914 aa	Known RBP	13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	CCAR2	Q8N163	923 aa	Known RBP	13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	DDX19A	Q9NUU7	478 aa	Known RBP	13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	USP16	Q9Y5T5	823 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	CCDC69	A6NI79	296 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	NME9	Q86XW9	330 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	NEK11	Q8NG66	645 aa		13.94	□□□□□ -0.18
VTI1A-205	ENST00000483122	AOX1	Q06278	1338 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	GOLGA6L4	A6NEF3	574 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	CWC27	Q6UX04	472 aa	Known RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	JAKMIP1	Q96N16	626 aa	Known RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	TSPYL1	Q9H0U9	437 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	PNMA6A	P0CW24	399 aa	Predicted RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	IQCB1	Q15051	598 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	FILIP1	Q7Z7B0	1213 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	NFATC2IP	Q8NCF5	419 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	PI4K2B	Q8TCG2	481 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	SYTL4	Q96C24	671 aa	Predicted RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	SPATA32	Q96LK8	384 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	SLC26A8	Q96RN1	970 aa		13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	LRRFIP2	Q9Y608	721 aa	Known RBP	13.93	□□□□□ -0.18
VTI1A-205	ENST00000483122	NEMF	O60524	1076 aa		13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	VPS53	Q5VIR6	699 aa		13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	RNF20	Q5VTR2	975 aa		13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	CHD2	O14647	1828 aa	Known RBP	13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	PTH1R	Q03431	593 aa		13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	LEO1	Q8WVC0	666 aa	Predicted RBP	13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	PGBD1	Q96JS3	809 aa		13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.92	□□□□□ -0.18
VTI1A-205	ENST00000483122	TTC21B	Q7Z4L5	1316 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	POLR3G	O15318	223 aa	Predicted RBP	13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	SARM1	Q6SZW1	724 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	ZBTB9	Q96C00	473 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	MRFAP1L1	Q96HT8	127 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	MET	P08581	1390 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	AATK	Q6ZMQ8	1374 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	GOLGA6L19	H0YKK7	550 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	COL9A3	Q14050	684 aa	Predicted RBP	13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	PRPF40B	Q6NWY9	871 aa	Known RBP	13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	BICD2	Q8TD16	824 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	TPCN1	Q9ULQ1	816 aa		13.91	□□□□□ -0.18
VTI1A-205	ENST00000483122	NPHP3	Q7Z494	1330 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	L2HGDH	Q9H9P8	463 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	NWD1	Q149M9	1564 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	XRN1	Q8IZH2	1706 aa	Known RBP	13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122		A0A087WWV3	80 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	GNAI3	P08754	354 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	ARHGAP29	Q52LW3	1261 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	SULT6B1	Q6IMI4	303 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	ZFP91	Q96JP5	570 aa	Predicted RBP	13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	ZSWIM6	Q9HCJ5	1215 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	CYP46A1	Q9Y6A2	500 aa		13.9	□□□□□ -0.18
VTI1A-205	ENST00000483122	ATP7B	P35670	1465 aa		13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	HTATSF1	O43719	755 aa	Known RBP	13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	IRX3	P78415	501 aa	Predicted RBP	13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	ST5	P78524	1137 aa		13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	SNW1	Q13573	536 aa	Known RBP	13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	CCDC93	Q567U6	631 aa		13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	SYT10	Q6XYQ8	523 aa		13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	CNTROB	Q8N137	903 aa		13.89	□□□□□ -0.19
VTI1A-205	ENST00000483122	LARP1	Q6PKG0	1096 aa	Known RBP	13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	SOS1	Q07889	1333 aa	Predicted RBP	13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	CRB1	P82279	1406 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	CPS1	P31327	1500 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	DLC1	Q96QB1	1528 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	E4F1	Q66K89	784 aa	Predicted RBP	13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	KRBA2	Q6ZNG9	492 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	SMARCE1	Q969G3	411 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	KCND1	Q9NSA2	647 aa		13.88	□□□□□ -0.19
VTI1A-205	ENST00000483122	TECPR2	O15040	1411 aa		13.87	□□□□□ -0.19
VTI1A-205	ENST00000483122	PTPRU	Q92729	1446 aa		13.87	□□□□□ -0.19
VTI1A-205	ENST00000483122	GORAB	Q5T7V8	394 aa		13.87	□□□□□ -0.19
VTI1A-205	ENST00000483122	RSPH14	Q9UHP6	348 aa		13.87	□□□□□ -0.19
VTI1A-205	ENST00000483122	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
VTI1A-205	ENST00000483122	KIF2A	O00139	706 aa	Predicted RBP	13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	SURF6	O75683	361 aa	Known RBP	13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	SEC31A	O94979	1220 aa	Known RBP	13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	TEX35	Q5T0J7	233 aa		13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	RHPN1	Q8TCX5	695 aa		13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	NECTIN2	Q92692	538 aa		13.86	□□□□□ -0.19
VTI1A-205	ENST00000483122	PPP1R13B	Q96KQ4	1090 aa		13.86	□□□□□ -0.19

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