RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 SPATA31A5Q5VU36 1347 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 SPATA31A7Q8IWB4 1347 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.79□□□□□ -1.32
PTCD3-213ENST00000480102 BCL9O00512 1426 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 CTDSPL2Q05D32 466 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 LINC01559Q495D7 138 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 ZNF511Q8NB15 262 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 SNIP1Q8TAD8 396 aaKnown RBP6.79□□□□□ -1.32
PTCD3-213ENST00000480102 BAP1Q92560 729 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 PCMTD1Q96MG8 357 aaPredicted RBP6.79□□□□□ -1.32
PTCD3-213ENST00000480102 SLC12A5Q9H2X9 1139 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 NSD2O96028 1365 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 KIAA0232Q92628 1395 aa6.79□□□□□ -1.32
PTCD3-213ENST00000480102 USP54Q70EL1 1684 aa6.78□□□□□ -1.32
PTCD3-213ENST00000480102 BLMP54132 1417 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-213ENST00000480102 EHBP1Q8NDI1 1231 aa6.78□□□□□ -1.32
PTCD3-213ENST00000480102 BTG4Q9NY30 223 aa6.78□□□□□ -1.32
PTCD3-213ENST00000480102 RTL1A6NKG5 1358 aa6.78□□□□□ -1.32
PTCD3-213ENST00000480102 NWD2Q9ULI1 1742 aa6.78□□□□□ -1.32
PTCD3-213ENST00000480102 SPATA31A1Q5TZJ5 1347 aa6.77□□□□□ -1.32
PTCD3-213ENST00000480102 RGS12O14924 1447 aa6.77□□□□□ -1.33
PTCD3-213ENST00000480102 TTC24A2A3L6 582 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-213ENST00000480102 MYT1Q01538 1121 aa6.77□□□□□ -1.33
PTCD3-213ENST00000480102 NPC1L1Q9UHC9 1359 aa6.77□□□□□ -1.33
PTCD3-213ENST00000480102 NRKQ7Z2Y5 1582 aa6.77□□□□□ -1.33
PTCD3-213ENST00000480102 COL14A1Q05707 1796 aaKnown RBP6.77□□□□□ -1.33
PTCD3-213ENST00000480102 WDR17Q8IZU2 1322 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 CRB1P82279 1406 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 NFAT5O94916 1531 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 CRYBG1Q9Y4K1 1723 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 FYB1O15117 783 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 RFC5P40937 340 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 TCP11L2Q8N4U5 519 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 DISP2A7MBM2 1401 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 CGNL1Q0VF96 1302 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 WASHC2AQ641Q2 1341 aa6.76□□□□□ -1.33
PTCD3-213ENST00000480102 COL5A2P05997 1499 aaPredicted RBP6.75□□□□□ -1.33
PTCD3-213ENST00000480102 CCDC7Q96M83 1385 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 SIAH2O43255 324 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 AP1G2O75843 785 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 AVPP01185 164 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 HSPA5P11021 654 aaKnown RBP6.75□□□□□ -1.33
PTCD3-213ENST00000480102 SMPD1P17405 629 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 ARMC2Q8NEN0 867 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 TMC1Q8TDI8 760 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 LRRN4Q8WUT4 740 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 IP6K1Q92551 441 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 COG3Q96JB2 828 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 CARD10Q9BWT7 1032 aa6.75□□□□□ -1.33
PTCD3-213ENST00000480102 LMO7Q8WWI1 1683 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 ABCA3Q99758 1704 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 J3QL48 77 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 USP17L8P0C7I0 530 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 VARSP26640 1264 aaKnown RBP6.74□□□□□ -1.33
PTCD3-213ENST00000480102 NBPF14Q5TI25 921 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 ERICH6Q7L0X2 663 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 SEPT12Q8IYM1 358 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 CRIPAKQ8N1N5 446 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 GTF3C3Q9Y5Q9 886 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 PHRF1Q9P1Y6 1649 aaKnown RBP6.74□□□□□ -1.33
PTCD3-213ENST00000480102 CAMTA1Q9Y6Y1 1673 aa6.74□□□□□ -1.33
PTCD3-213ENST00000480102 MON2Q7Z3U7 1717 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 PARD3Q8TEW0 1356 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 EP400Q96L91 3159 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 ALDH1A1P00352 501 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 ZC3H6P61129 1189 aaKnown RBP6.73□□□□□ -1.33
PTCD3-213ENST00000480102 NME9Q86XW9 330 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 FOXJ1Q92949 421 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 CARD14Q9BXL6 1004 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 PIK3C2AO00443 1686 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 GLI3P10071 1580 aa6.73□□□□□ -1.33
PTCD3-213ENST00000480102 INSRP06213 1382 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 HMGB2P26583 209 aaKnown RBP6.72□□□□□ -1.33
PTCD3-213ENST00000480102 EVA1CP58658 441 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 CTC1Q2NKJ3 1217 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 FAM196AQ6ZSG2 479 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 KRT27Q7Z3Y8 459 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 BPHLQ86WA6 291 aaPredicted RBP6.72□□□□□ -1.33
PTCD3-213ENST00000480102 GPKOWQ92917 476 aaPredicted RBP eCLIP6.72□□□□□ -1.333e-6■□□□□ 10.4
PTCD3-213ENST00000480102 AAASQ9NRG9 546 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 TLL2Q9Y6L7 1015 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 NCAPD2Q15021 1401 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 SMG6Q86US8 1419 aaKnown RBP6.72□□□□□ -1.33
PTCD3-213ENST00000480102 MARF1Q9Y4F3 1742 aaKnown RBP6.72□□□□□ -1.33
PTCD3-213ENST00000480102 AKAP12Q02952 1782 aa6.72□□□□□ -1.33
PTCD3-213ENST00000480102 THSD7AQ9UPZ6 1657 aa6.71□□□□□ -1.33
PTCD3-213ENST00000480102 FLT4P35916 1363 aa6.71□□□□□ -1.33
PTCD3-213ENST00000480102 NRAPQ86VF7 1730 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 ST8SIA5O15466 376 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 NR6A1Q15406 480 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 TMEM259Q4ZIN3 620 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 C4orf48Q5BLP8 95 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 LARP1Q6PKG0 1096 aaKnown RBP6.71□□□□□ -1.34
PTCD3-213ENST00000480102 SH3BP5LQ7L8J4 393 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 SH3RF1Q7Z6J0 888 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.71□□□□□ -1.34
PTCD3-213ENST00000480102 MPNDQ8N594 471 aa6.71□□□□□ -1.34
PTCD3-213ENST00000480102 HMX1Q9NP08 348 aaPredicted RBP6.71□□□□□ -1.34
PTCD3-213ENST00000480102 RGPD8O14715 1765 aaPredicted RBP6.71□□□□□ -1.34
PTCD3-213ENST00000480102 KIF7Q2M1P5 1343 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms