RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 BOLA2Q9H3K6 86 aa15.76■□□□□ 0.11
SEC13-216ENST00000479868 ZBTB3Q9H5J0 574 aa15.76■□□□□ 0.11
SEC13-216ENST00000479868 TMOD3Q9NYL9 352 aa15.76■□□□□ 0.11
SEC13-216ENST00000479868 SNX14Q9Y5W7 946 aa15.76■□□□□ 0.11
SEC13-216ENST00000479868 H7C1W4 665 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 BAG4O95429 457 aaKnown RBP15.75■□□□□ 0.11
SEC13-216ENST00000479868 RASEFQ8IZ41 740 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 BRPF3Q9ULD4 1205 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 PTH1RQ03431 593 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 TFCP2Q12800 502 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 LMBR1LQ6UX01 489 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 RUFY2Q8WXA3 655 aa15.75■□□□□ 0.11
SEC13-216ENST00000479868 FOXO4P98177 505 aa15.74■□□□□ 0.11
SEC13-216ENST00000479868 CUL4AQ13619 759 aa15.74■□□□□ 0.11
SEC13-216ENST00000479868 CWC25Q9NXE8 425 aaPredicted RBP15.74■□□□□ 0.11
SEC13-216ENST00000479868 ASAP1Q9ULH1 1129 aa15.74■□□□□ 0.11
SEC13-216ENST00000479868 ZDHHC9Q9Y397 364 aa15.74■□□□□ 0.11
SEC13-216ENST00000479868 PIGBQ92521 554 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 ITGB4P16144 1822 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 TNNI3KQ59H18 835 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 FAM227BQ96M60 508 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 DBNLQ9UJU6 430 aaKnown RBP15.73■□□□□ 0.11
SEC13-216ENST00000479868 FPGT-TNNI3KV9GXZ4 949 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 ROBO1Q9Y6N7 1651 aa15.73■□□□□ 0.11
SEC13-216ENST00000479868 NMIQ13287 307 aaPredicted RBP15.72■□□□□ 0.11
SEC13-216ENST00000479868 CHMP3Q9Y3E7 222 aa15.72■□□□□ 0.11
SEC13-216ENST00000479868 COL14A1Q05707 1796 aaKnown RBP15.72■□□□□ 0.11
SEC13-216ENST00000479868 KAT6BQ8WYB5 2073 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 CCDC191Q8NCU4 936 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 DISP2A7MBM2 1401 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 FSD2A1L4K1 749 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 EDC3Q96F86 508 aaKnown RBP15.71■□□□□ 0.11
SEC13-216ENST00000479868 TTC14Q96N46 770 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 FSD1Q9BTV5 496 aa15.71■□□□□ 0.11
SEC13-216ENST00000479868 ZNF330Q9Y3S2 320 aaPredicted RBP15.71■□□□□ 0.11
SEC13-216ENST00000479868 A0A0D9SFI3 127 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 GOLGA6L22H0YM25 854 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 PTMSP20962 102 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 DNAJC10Q8IXB1 793 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 IL27Q8NEV9 243 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 INTS4Q96HW7 963 aaKnown RBP15.7■□□□□ 0.1
SEC13-216ENST00000479868 ATG3Q9NT62 314 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 CCDC171Q6TFL3 1326 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 COL16A1Q07092 1604 aaPredicted RBP15.7■□□□□ 0.1
SEC13-216ENST00000479868 HIP1O00291 1037 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 SKOR2Q2VWA4 1001 aaPredicted RBP15.7■□□□□ 0.1
SEC13-216ENST00000479868 MCTP1Q6DN14 999 aa15.7■□□□□ 0.1
SEC13-216ENST00000479868 PRPF40BQ6NWY9 871 aaKnown RBP15.7■□□□□ 0.1
SEC13-216ENST00000479868 CPA1P15085 419 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 ATP5JP18859 108 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 DBNDD2Q9BQY9 259 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 NDUFB9Q9Y6M9 179 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 GOLGA6L3A6NEY3 463 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 ADCK5Q3MIX3 580 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 ATG9AQ7Z3C6 839 aa15.69■□□□□ 0.1
SEC13-216ENST00000479868 CASTP20810 708 aaKnown RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 AK2P54819 239 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 NECTIN1Q15223 517 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 L1TD1Q5T7N2 865 aaKnown RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 VSIG10Q8N0Z9 540 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 SNRKQ9NRH2 765 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 FOXD4L5Q5VV16 416 aaPredicted RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 FOXD4L4Q8WXT5 416 aaPredicted RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 KCNB2Q92953 911 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 CHAMP1Q96JM3 812 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 LARP6Q9BRS8 491 aaKnown RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 ISCA1Q9BUE6 129 aa15.68■□□□□ 0.1
SEC13-216ENST00000479868 RBM8AQ9Y5S9 174 aaKnown RBP15.68■□□□□ 0.1
SEC13-216ENST00000479868 AHDC1Q5TGY3 1603 aaPredicted RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 COL22A1Q8NFW1 1626 aaPredicted RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 TCIRG1Q13488 830 aa15.67■□□□□ 0.1
SEC13-216ENST00000479868 RUFY3Q7L099 469 aa15.67■□□□□ 0.1
SEC13-216ENST00000479868 MAP4K1Q92918 833 aa15.67■□□□□ 0.1
SEC13-216ENST00000479868 TEX13AQ9BXU3 409 aaPredicted RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 PLCH1Q4KWH8 1693 aa15.67■□□□□ 0.1
SEC13-216ENST00000479868 MED23Q9ULK4 1368 aa15.67■□□□□ 0.1
SEC13-216ENST00000479868 ZNF589Q86UQ0 364 aaPredicted RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 ZNF594Q96JF6 807 aaPredicted RBP15.67■□□□□ 0.1
SEC13-216ENST00000479868 BCL9O00512 1426 aa15.66■□□□□ 0.1
SEC13-216ENST00000479868 BRD1O95696 1058 aa15.66■□□□□ 0.1
SEC13-216ENST00000479868 JAKMIP1Q96N16 626 aaKnown RBP15.66■□□□□ 0.1
SEC13-216ENST00000479868 SLC4A9Q96Q91 983 aa15.66■□□□□ 0.1
SEC13-216ENST00000479868 LMBRD1Q9NUN5 540 aa15.66■□□□□ 0.1
SEC13-216ENST00000479868 XRCC6P12956 609 aaKnown RBP eCLIP15.65■□□□□ 0.1
SEC13-216ENST00000479868 LRRC24Q50LG9 513 aa15.65■□□□□ 0.1
SEC13-216ENST00000479868 CREB3L3Q68CJ9 461 aa15.65■□□□□ 0.1
SEC13-216ENST00000479868 DNAJC2Q99543 621 aaKnown RBP15.65■□□□□ 0.1
SEC13-216ENST00000479868 CCDC9Q9Y3X0 531 aaKnown RBP15.65■□□□□ 0.1
SEC13-216ENST00000479868 DDX49Q9Y6V7 483 aaKnown RBP15.65■□□□□ 0.1
SEC13-216ENST00000479868 STARD3NLO95772 234 aa15.65■□□□□ 0.1
SEC13-216ENST00000479868 CHGBP05060 677 aa15.65■□□□□ 0.1
SEC13-216ENST00000479868 KLHL40Q2TBA0 621 aa15.65■□□□□ 0.1
SEC13-216ENST00000479868 KCNJ4P48050 445 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 KIF6Q6ZMV9 814 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 ZSWIM6Q9HCJ5 1215 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 LIMCH1Q9UPQ0 1083 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 WNK3Q9BYP7 1800 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 EXOC5O00471 708 aa15.64■□□□□ 0.09
SEC13-216ENST00000479868 IL15P40933 162 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms