RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 PRPF40BQ6NWY9 871 aaKnown RBP29.33■■■□□ 2.29
TRAF4-211ENST00000478021 NLRP10Q86W26 655 aa29.33■■■□□ 2.29
TRAF4-211ENST00000478021 UTP14AQ9BVJ6 771 aaKnown RBP29.33■■■□□ 2.29
TRAF4-211ENST00000478021 GOLGA2Q08379 1002 aa29.31■■■□□ 2.28
TRAF4-211ENST00000478021 C9orf131Q5VYM1 1079 aa29.31■■■□□ 2.28
TRAF4-211ENST00000478021 ZNF526Q8TF50 670 aaPredicted RBP29.31■■■□□ 2.28
TRAF4-211ENST00000478021 CCDC88AQ3V6T2 1871 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 RIC1Q4ADV7 1423 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 ATP5J2-PTCD1G3V325 749 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 EXOSC9Q06265 439 aaKnown RBP29.29■■■□□ 2.28
TRAF4-211ENST00000478021 RIC3Q7Z5B4 369 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 CHMP4AQ9BY43 222 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 RNF181Q9P0P0 153 aa29.29■■■□□ 2.28
TRAF4-211ENST00000478021 FER1L6Q2WGJ9 1857 aa29.28■■■□□ 2.28
TRAF4-211ENST00000478021 DIEXFQ68CQ4 756 aaKnown RBP29.28■■■□□ 2.28
TRAF4-211ENST00000478021 C3orf67Q6ZVT6 689 aa29.28■■■□□ 2.28
TRAF4-211ENST00000478021 STK31Q9BXU1 1019 aa29.28■■■□□ 2.28
TRAF4-211ENST00000478021 LAMB2P55268 1798 aa29.27■■■□□ 2.28
TRAF4-211ENST00000478021 NFKBIEO00221 500 aa29.27■■■□□ 2.28
TRAF4-211ENST00000478021 CRY2Q49AN0 593 aa29.27■■■□□ 2.28
TRAF4-211ENST00000478021 SYNE4Q8N205 404 aa29.27■■■□□ 2.28
TRAF4-211ENST00000478021 TRMT112Q9UI30 125 aaKnown RBP29.27■■■□□ 2.28
TRAF4-211ENST00000478021 ZNF521Q96K83 1311 aa29.26■■■□□ 2.27
TRAF4-211ENST00000478021 ISCA1Q9BUE6 129 aa29.26■■■□□ 2.27
TRAF4-211ENST00000478021 MYH16Q9H6N6 1097 aa29.26■■■□□ 2.27
TRAF4-211ENST00000478021 PRELPP51888 382 aa29.25■■■□□ 2.27
TRAF4-211ENST00000478021 RPGRQ92834 1020 aaKnown RBP29.25■■■□□ 2.27
TRAF4-211ENST00000478021 RNF123Q5XPI4 1314 aa29.24■■■□□ 2.27
TRAF4-211ENST00000478021 VAMP4O75379 141 aa29.23■■■□□ 2.27
TRAF4-211ENST00000478021 HCLS1P14317 486 aaPredicted RBP29.23■■■□□ 2.27
TRAF4-211ENST00000478021 G2E3Q7L622 706 aa29.23■■■□□ 2.27
TRAF4-211ENST00000478021 NLRP3Q96P20 1036 aa29.23■■■□□ 2.27
TRAF4-211ENST00000478021 MYD88Q99836 296 aa29.23■■■□□ 2.27
TRAF4-211ENST00000478021 DDX60Q8IY21 1712 aaKnown RBP29.23■■■□□ 2.27
TRAF4-211ENST00000478021 SH3TC1Q8TE82 1336 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 DDX58O95786 925 aaKnown RBP29.22■■■□□ 2.27
TRAF4-211ENST00000478021 SLC4A2P04920 1241 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 ALDH1B1P30837 517 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 SLC10A5Q5PT55 438 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 OLFM4Q6UX06 510 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 C7orf43Q8WVR3 580 aa29.22■■■□□ 2.27
TRAF4-211ENST00000478021 GPBP1L1Q9HC44 474 aaPredicted RBP29.22■■■□□ 2.27
TRAF4-211ENST00000478021 TIAM2Q8IVF5 1701 aa29.21■■■□□ 2.27
TRAF4-211ENST00000478021 MIER1Q8N108 512 aa29.21■■■□□ 2.27
TRAF4-211ENST00000478021 LMNB1P20700 586 aa29.2■■■□□ 2.26
TRAF4-211ENST00000478021 RTL5Q5HYW3 569 aaPredicted RBP29.2■■■□□ 2.26
TRAF4-211ENST00000478021 SOGA3Q5TF21 947 aa29.2■■■□□ 2.26
TRAF4-211ENST00000478021 FAM89AQ96GI7 184 aa29.2■■■□□ 2.26
TRAF4-211ENST00000478021 RBM17Q96I25 401 aaKnown RBP29.2■■■□□ 2.26
TRAF4-211ENST00000478021 MAP3K2Q9Y2U5 619 aa29.2■■■□□ 2.26
TRAF4-211ENST00000478021 HOXA10P31260 410 aaPredicted RBP29.19■■■□□ 2.26
TRAF4-211ENST00000478021 CCDC93Q567U6 631 aa29.19■■■□□ 2.26
TRAF4-211ENST00000478021 CACNA1FO60840 1977 aa29.19■■■□□ 2.26
TRAF4-211ENST00000478021 METTL22Q9BUU2 404 aaPredicted RBP29.18■■■□□ 2.26
TRAF4-211ENST00000478021 TAOK3Q9H2K8 898 aa29.18■■■□□ 2.26
TRAF4-211ENST00000478021 PI4KAP2A4QPH2 592 aa29.17■■■□□ 2.26
TRAF4-211ENST00000478021 TRIM28Q13263 835 aaKnown RBP29.17■■■□□ 2.26
TRAF4-211ENST00000478021 KSR2Q6VAB6 950 aa29.17■■■□□ 2.26
TRAF4-211ENST00000478021 PI4KAP1Q8N8J0 262 aa29.17■■■□□ 2.26
TRAF4-211ENST00000478021 DICER1Q9UPY3 1922 aaKnown RBP29.16■■■□□ 2.26
TRAF4-211ENST00000478021 SLC51AQ86UW1 340 aa29.16■■■□□ 2.26
TRAF4-211ENST00000478021 CRAMP1Q96RY5 1269 aa29.16■■■□□ 2.26
TRAF4-211ENST00000478021 LTBP3Q9NS15 1303 aa29.16■■■□□ 2.26
TRAF4-211ENST00000478021 FLIIQ13045 1269 aa29.15■■■□□ 2.26
TRAF4-211ENST00000478021 TAF1P21675 1872 aa29.14■■■□□ 2.26
TRAF4-211ENST00000478021 ABCC4O15439 1325 aa29.13■■■□□ 2.25
TRAF4-211ENST00000478021 PPEF1O14829 653 aaPredicted RBP29.12■■■□□ 2.25
TRAF4-211ENST00000478021 CCDC191Q8NCU4 936 aa29.12■■■□□ 2.25
TRAF4-211ENST00000478021 JARID2Q92833 1246 aaPredicted RBP29.12■■■□□ 2.25
TRAF4-211ENST00000478021 CWC25Q9NXE8 425 aaPredicted RBP29.12■■■□□ 2.25
TRAF4-211ENST00000478021 E9PSI1 815 aa29.11■■■□□ 2.25
TRAF4-211ENST00000478021 IRS4O14654 1257 aaPredicted RBP29.11■■■□□ 2.25
TRAF4-211ENST00000478021 FKBP5Q13451 457 aaPredicted RBP29.11■■■□□ 2.25
TRAF4-211ENST00000478021 ZBTB38Q8NAP3 1195 aaPredicted RBP29.11■■■□□ 2.25
TRAF4-211ENST00000478021 IGKV5-2P06315 115 aa29.1■■■□□ 2.25
TRAF4-211ENST00000478021 FKBP4Q02790 459 aaKnown RBP eCLIP29.1■■■□□ 2.25
TRAF4-211ENST00000478021 CDCA7LQ96GN5 454 aa29.1■■■□□ 2.25
TRAF4-211ENST00000478021 SLFN5Q08AF3 891 aa29.09■■■□□ 2.25
TRAF4-211ENST00000478021 NEXNQ0ZGT2 675 aa29.09■■■□□ 2.25
TRAF4-211ENST00000478021 DDX46Q7L014 1031 aaKnown RBP29.09■■■□□ 2.25
TRAF4-211ENST00000478021 RTKN2Q8IZC4 609 aa29.09■■■□□ 2.25
TRAF4-211ENST00000478021 NMRK2Q9NPI5 230 aa29.09■■■□□ 2.25
TRAF4-211ENST00000478021 ZNF277Q9NRM2 450 aaPredicted RBP29.09■■■□□ 2.25
TRAF4-211ENST00000478021 SNED1Q8TER0 1413 aa29.09■■■□□ 2.25
TRAF4-211ENST00000478021 CWF19L2Q2TBE0 894 aaKnown RBP29.08■■■□□ 2.25
TRAF4-211ENST00000478021 PCCAP05165 728 aaPredicted RBP29.07■■■□□ 2.24
TRAF4-211ENST00000478021 ZC3H4Q9UPT8 1303 aaKnown RBP29.07■■■□□ 2.24
TRAF4-211ENST00000478021 KDM2BQ8NHM5 1336 aa29.06■■■□□ 2.24
TRAF4-211ENST00000478021 KIF3CO14782 793 aa29.06■■■□□ 2.24
TRAF4-211ENST00000478021 C1QTNF8P60827 252 aa29.05■■■□□ 2.24
TRAF4-211ENST00000478021 GRAPQ13588 217 aa29.05■■■□□ 2.24
TRAF4-211ENST00000478021 SF3B3Q15393 1217 aaKnown RBP29.05■■■□□ 2.24
TRAF4-211ENST00000478021 CC2D2BQ6DHV5 1058 aa29.05■■■□□ 2.24
TRAF4-211ENST00000478021 GRAPLQ8TC17 118 aaPredicted RBP29.05■■■□□ 2.24
TRAF4-211ENST00000478021 DNAAF4Q8WXU2 420 aa29.05■■■□□ 2.24
TRAF4-211ENST00000478021 COL4A1P02462 1669 aa29.05■■■□□ 2.24
TRAF4-211ENST00000478021 NEURL1BA8MQ27 555 aa29.04■■■□□ 2.24
TRAF4-211ENST00000478021 ATP6V0A2Q9Y487 856 aa29.04■■■□□ 2.24
TRAF4-211ENST00000478021 F6X3S4 739 aa29.03■■■□□ 2.24
TRAF4-211ENST00000478021 GLTPD2A6NH11 291 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms