RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 ALDH1B1P30837 517 aa28.2■■■□□ 2.1
COL9A3-211ENST00000477612 SLC10A5Q5PT55 438 aa28.2■■■□□ 2.1
COL9A3-211ENST00000477612 IL16Q14005 1332 aa28.19■■■□□ 2.1
COL9A3-211ENST00000477612 TIAM2Q8IVF5 1701 aa28.19■■■□□ 2.1
COL9A3-211ENST00000477612 C8orf58Q8NAV2 365 aa28.19■■■□□ 2.1
COL9A3-211ENST00000477612 PLBD2Q8NHP8 589 aa28.19■■■□□ 2.1
COL9A3-211ENST00000477612 ANKRD13DQ6ZTN6 518 aa28.18■■■□□ 2.1
COL9A3-211ENST00000477612 UTP14AQ9BVJ6 771 aaKnown RBP28.18■■■□□ 2.1
COL9A3-211ENST00000477612 CHMP4AQ9BY43 222 aa28.18■■■□□ 2.1
COL9A3-211ENST00000477612 HOXA10P31260 410 aaPredicted RBP28.17■■■□□ 2.1
COL9A3-211ENST00000477612 NLRP10Q86W26 655 aa28.17■■■□□ 2.1
COL9A3-211ENST00000477612 ZNF219Q9P2Y4 722 aaPredicted RBP28.17■■■□□ 2.1
COL9A3-211ENST00000477612 LAMB2P55268 1798 aa28.16■■■□□ 2.1
COL9A3-211ENST00000477612 ELL2O00472 640 aaPredicted RBP28.15■■■□□ 2.1
COL9A3-211ENST00000477612 TAOK3Q9H2K8 898 aa28.14■■■□□ 2.1
COL9A3-211ENST00000477612 KDM2BQ8NHM5 1336 aa28.14■■■□□ 2.09
COL9A3-211ENST00000477612 CCDC93Q567U6 631 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 WDR63Q8IWG1 891 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 TSPYL6Q8N831 410 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 NLRP3Q96P20 1036 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 ISCA1Q9BUE6 129 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 CACNA1FO60840 1977 aa28.13■■■□□ 2.09
COL9A3-211ENST00000477612 TSR2Q969E8 191 aaKnown RBP28.12■■■□□ 2.09
COL9A3-211ENST00000477612 CRAMP1Q96RY5 1269 aa28.12■■■□□ 2.09
COL9A3-211ENST00000477612 SENP3-EIF4A1A0A087X0R7 540 aa28.11■■■□□ 2.09
COL9A3-211ENST00000477612 TRIM28Q13263 835 aaKnown RBP28.11■■■□□ 2.09
COL9A3-211ENST00000477612 CCDC30Q5VVM6 783 aa28.11■■■□□ 2.09
COL9A3-211ENST00000477612 PHAXQ9H814 394 aaKnown RBP28.11■■■□□ 2.09
COL9A3-211ENST00000477612 NMRK2Q9NPI5 230 aa28.11■■■□□ 2.09
COL9A3-211ENST00000477612 SNED1Q8TER0 1413 aa28.1■■■□□ 2.09
COL9A3-211ENST00000477612 C3orf67Q6ZVT6 689 aa28.1■■■□□ 2.09
COL9A3-211ENST00000477612 RPGRQ92834 1020 aaKnown RBP28.1■■■□□ 2.09
COL9A3-211ENST00000477612 DDX60Q8IY21 1712 aaKnown RBP28.09■■■□□ 2.09
COL9A3-211ENST00000477612 GLTPD2A6NH11 291 aa28.09■■■□□ 2.09
COL9A3-211ENST00000477612 RTKN2Q8IZC4 609 aa28.09■■■□□ 2.09
COL9A3-211ENST00000477612 RBM17Q96I25 401 aaKnown RBP28.09■■■□□ 2.09
COL9A3-211ENST00000477612 FKBP4Q02790 459 aaKnown RBP eCLIP28.08■■■□□ 2.09
COL9A3-211ENST00000477612 CC2D2BQ6DHV5 1058 aa28.08■■■□□ 2.09
COL9A3-211ENST00000477612 FAM9BQ8IZU0 186 aa28.08■■■□□ 2.09
COL9A3-211ENST00000477612 TRMT112Q9UI30 125 aaKnown RBP28.08■■■□□ 2.09
COL9A3-211ENST00000477612 SH3TC1Q8TE82 1336 aa28.08■■■□□ 2.09
COL9A3-211ENST00000477612 TOMM70O94826 608 aa28.06■■■□□ 2.08
COL9A3-211ENST00000477612 GOLGA2Q08379 1002 aa28.06■■■□□ 2.08
COL9A3-211ENST00000477612 OLFM4Q6UX06 510 aa28.06■■■□□ 2.08
COL9A3-211ENST00000477612 TWISTNBQ3B726 338 aaPredicted RBP28.05■■■□□ 2.08
COL9A3-211ENST00000477612 GRIPAP1Q4V328 841 aa28.05■■■□□ 2.08
COL9A3-211ENST00000477612 RIC3Q7Z5B4 369 aa28.05■■■□□ 2.08
COL9A3-211ENST00000477612 SYNE4Q8N205 404 aa28.05■■■□□ 2.08
COL9A3-211ENST00000477612 WDR90Q96KV7 1748 aa28.04■■■□□ 2.08
COL9A3-211ENST00000477612 ATP5J2-PTCD1G3V325 749 aa28.04■■■□□ 2.08
COL9A3-211ENST00000477612 FANCIQ9NVI1 1328 aa28.03■■■□□ 2.08
COL9A3-211ENST00000477612 HCLS1P14317 486 aaPredicted RBP28.03■■■□□ 2.08
COL9A3-211ENST00000477612 DPY19L2Q6NUT2 758 aa28.03■■■□□ 2.08
COL9A3-211ENST00000477612 PSMD1Q99460 953 aa28.03■■■□□ 2.08
COL9A3-211ENST00000477612 RRAGCQ9HB90 399 aa28.03■■■□□ 2.08
COL9A3-211ENST00000477612 SALL2Q9Y467 1007 aaPredicted RBP28.03■■■□□ 2.08
COL9A3-211ENST00000477612 TAF1P21675 1872 aa28.02■■■□□ 2.08
COL9A3-211ENST00000477612 DDX58O95786 925 aaKnown RBP28.01■■■□□ 2.07
COL9A3-211ENST00000477612 ABCC4O15439 1325 aa28■■■□□ 2.07
COL9A3-211ENST00000477612 PPEF1O14829 653 aaPredicted RBP28■■■□□ 2.07
COL9A3-211ENST00000477612 STK31Q9BXU1 1019 aa28■■■□□ 2.07
COL9A3-211ENST00000477612 RBM46Q8TBY0 533 aaKnown RBP27.99■■■□□ 2.07
COL9A3-211ENST00000477612 FAM89AQ96GI7 184 aa27.99■■■□□ 2.07
COL9A3-211ENST00000477612 METTL22Q9BUU2 404 aaPredicted RBP27.99■■■□□ 2.07
COL9A3-211ENST00000477612 BBOX1O75936 387 aa27.98■■■□□ 2.07
COL9A3-211ENST00000477612 VEGFAP15692 232 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-211ENST00000477612 SF3B3Q15393 1217 aaKnown RBP27.98■■■□□ 2.07
COL9A3-211ENST00000477612 CCDC191Q8NCU4 936 aa27.98■■■□□ 2.07
COL9A3-211ENST00000477612 SPINK5Q9NQ38 1064 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-211ENST00000477612 ZNF277Q9NRM2 450 aaPredicted RBP27.98■■■□□ 2.07
COL9A3-211ENST00000477612 ATP6V0A2Q9Y487 856 aa27.98■■■□□ 2.07
COL9A3-211ENST00000477612 POTECB2RU33 542 aa27.97■■■□□ 2.07
COL9A3-211ENST00000477612 VAMP4O75379 141 aa27.97■■■□□ 2.07
COL9A3-211ENST00000477612 KSR2Q6VAB6 950 aa27.97■■■□□ 2.07
COL9A3-211ENST00000477612 MYD88Q99836 296 aa27.97■■■□□ 2.07
COL9A3-211ENST00000477612 ZNF521Q96K83 1311 aa27.96■■■□□ 2.07
COL9A3-211ENST00000477612 HSPA6P17066 643 aa27.96■■■□□ 2.07
COL9A3-211ENST00000477612 IARSP41252 1262 aaKnown RBP27.96■■■□□ 2.07
COL9A3-211ENST00000477612 C16orf71Q8IYS4 520 aaPredicted RBP27.96■■■□□ 2.07
COL9A3-211ENST00000477612 ZBTB38Q8NAP3 1195 aaPredicted RBP27.96■■■□□ 2.07
COL9A3-211ENST00000477612 SLC4A2P04920 1241 aa27.95■■■□□ 2.06
COL9A3-211ENST00000477612 DDX46Q7L014 1031 aaKnown RBP27.95■■■□□ 2.06
COL9A3-211ENST00000477612 SCN4AP35499 1836 aa27.95■■■□□ 2.06
COL9A3-211ENST00000477612 PI4KAP2A4QPH2 592 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 EXOSC9Q06265 439 aaKnown RBP27.94■■■□□ 2.06
COL9A3-211ENST00000477612 GRAPQ13588 217 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 SP8Q8IXZ3 490 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 PI4KAP1Q8N8J0 262 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 GRAPLQ8TC17 118 aaPredicted RBP27.94■■■□□ 2.06
COL9A3-211ENST00000477612 ZNF428Q96B54 188 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 MAP3K2Q9Y2U5 619 aa27.94■■■□□ 2.06
COL9A3-211ENST00000477612 LRRC37AA6NMS7 1700 aa27.93■■■□□ 2.06
COL9A3-211ENST00000477612 FZD9O00144 591 aa27.93■■■□□ 2.06
COL9A3-211ENST00000477612 IRS4O14654 1257 aaPredicted RBP27.93■■■□□ 2.06
COL9A3-211ENST00000477612 PCCAP05165 728 aaPredicted RBP27.93■■■□□ 2.06
COL9A3-211ENST00000477612 G2E3Q7L622 706 aa27.93■■■□□ 2.06
COL9A3-211ENST00000477612 MYH16Q9H6N6 1097 aa27.93■■■□□ 2.06
COL9A3-211ENST00000477612 TCERG1O14776 1098 aaKnown RBP27.92■■■□□ 2.06
COL9A3-211ENST00000477612 DDNO94850 711 aaPredicted RBP27.92■■■□□ 2.06
COL9A3-211ENST00000477612 FSTL1Q12841 308 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms