RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PANK2Q9BZ23 570 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 PTCH1Q13635 1447 aa17.19■□□□□ 0.34
HDAC6-220ENST00000477528 IL15P40933 162 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-220ENST00000477528 NBPF7P0C2Y1 421 aaPredicted RBP17.18■□□□□ 0.34
HDAC6-220ENST00000477528 AK2P54819 239 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 LRP2BPQ9P2M1 347 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 ZNF213O14771 459 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 USP44Q9H0E7 712 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 DDX19AQ9NUU7 478 aaKnown RBP17.18■□□□□ 0.34
HDAC6-220ENST00000477528 DIP2CQ9Y2E4 1556 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 NECAB1Q8N987 351 aa17.18■□□□□ 0.34
HDAC6-220ENST00000477528 MCMDC2Q4G0Z9 681 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 PIP4K2AP48426 406 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-220ENST00000477528 DHX8Q14562 1220 aaKnown RBP17.17■□□□□ 0.34
HDAC6-220ENST00000477528 LDHAL6AQ6ZMR3 332 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 WASF1Q92558 559 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 EXOC5O00471 708 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 GPTP24298 496 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 VPS53Q5VIR6 699 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 USP48Q86UV5 1035 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 NUTM2BA6NNL0 878 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-220ENST00000477528 NUTM2EB1AL46 878 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-220ENST00000477528 NUTM2AQ8IVF1 878 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-220ENST00000477528 SSH3Q8TE77 659 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 UBAC1Q9BSL1 405 aa17.17■□□□□ 0.34
HDAC6-220ENST00000477528 NEXMIFQ5QGS0 1516 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 EPB41L2O43491 1005 aaKnown RBP17.16■□□□□ 0.34
HDAC6-220ENST00000477528 MEX3CQ5U5Q3 659 aaKnown RBP17.16■□□□□ 0.34
HDAC6-220ENST00000477528 C8orf76Q96K31 380 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 F13A1P00488 732 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 CPSF1Q10570 1443 aaKnown RBP17.16■□□□□ 0.34
HDAC6-220ENST00000477528 UVSSAQ2YD98 709 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 CREB3L3Q68CJ9 461 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 NUP133Q8WUM0 1156 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 SNRKQ9NRH2 765 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 RAI14Q9P0K7 980 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 ZNF652Q9Y2D9 606 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 SGSM2O43147 1006 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 MAP3K12Q12852 859 aa17.16■□□□□ 0.34
HDAC6-220ENST00000477528 TTF1Q15361 905 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-220ENST00000477528 TFIP11Q9UBB9 837 aaKnown RBP17.15■□□□□ 0.34
HDAC6-220ENST00000477528 CNPY2Q9Y2B0 182 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 SLC5A1P13866 664 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 CCT2P78371 535 aaKnown RBP17.15■□□□□ 0.34
HDAC6-220ENST00000477528 STK11IPQ8N1F8 1099 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 METTL22Q9BUU2 404 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-220ENST00000477528 NEURL4Q96JN8 1562 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 NAPBQ9H115 298 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 USP25Q9UHP3 1055 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 CCDC171Q6TFL3 1326 aa17.15■□□□□ 0.34
HDAC6-220ENST00000477528 ZFYP08048 801 aaPredicted RBP17.14■□□□□ 0.34
HDAC6-220ENST00000477528 BRF1Q92994 677 aa17.14■□□□□ 0.34
HDAC6-220ENST00000477528 IL2RBP14784 551 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 TCEANC2Q96MN5 208 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 SLC52A2Q9HAB3 445 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 CTAGE5O15320 804 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 MCM5P33992 734 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 SIRT2Q8IXJ6 389 aa17.14■□□□□ 0.33
HDAC6-220ENST00000477528 ZSCAN16Q9H4T2 348 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-220ENST00000477528 PTPRMP28827 1452 aa17.13■□□□□ 0.33
HDAC6-220ENST00000477528 GOLGA8BA8MQT2 603 aa17.13■□□□□ 0.33
HDAC6-220ENST00000477528 TFCP2Q12800 502 aa17.13■□□□□ 0.33
HDAC6-220ENST00000477528 RUFY3Q7L099 469 aa17.13■□□□□ 0.33
HDAC6-220ENST00000477528 IBTKQ9P2D0 1353 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-220ENST00000477528 ANO8Q9HCE9 1232 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-220ENST00000477528 CCAR2Q8N163 923 aaKnown RBP17.13■□□□□ 0.33
HDAC6-220ENST00000477528 ARHGEF40Q8TER5 1519 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 VWDEQ8N2E2 1590 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 GUCY1B3Q02153 619 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 TRIM34Q9BYJ4 488 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 ABCF2Q9UG63 623 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 PCDH11XQ9BZA7 1347 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 PCDH11YQ9BZA8 1340 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 IPO7O95373 1038 aaKnown RBP17.12■□□□□ 0.33
HDAC6-220ENST00000477528 CKAP2LQ8IYA6 745 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 PDILTQ8N807 584 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 ANO10Q9NW15 660 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 PAG1Q9NWQ8 432 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 DACH1Q9UI36 760 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 GIGYF1O75420 1035 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-220ENST00000477528 OSBPL3Q9H4L5 887 aa17.12■□□□□ 0.33
HDAC6-220ENST00000477528 CCP110O43303 1012 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 PRIM1P49642 420 aaKnown RBP17.11■□□□□ 0.33
HDAC6-220ENST00000477528 SUCLG2Q96I99 432 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 SNX14Q9Y5W7 946 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 LRRC7Q96NW7 1537 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 SSH2Q76I76 1423 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 SERPINC1P01008 464 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 CLCN1P35523 988 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 PLBD2Q8NHP8 589 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 NCOA7Q8NI08 942 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 DEPDC5O75140 1603 aa17.11■□□□□ 0.33
HDAC6-220ENST00000477528 KCNQ3O43525 872 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 TXLNAP40222 546 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 NOL7Q9UMY1 257 aaKnown RBP17.1■□□□□ 0.33
HDAC6-220ENST00000477528 HSPA4P34932 840 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 BEND3Q5T5X7 828 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 PCMTD1Q96MG8 357 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-220ENST00000477528 UQCRHLA0A096LP55 91 aa17.1■□□□□ 0.33
HDAC6-220ENST00000477528 RAD21O60216 631 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms