RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 PPP1R42Q7Z4L9 355 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 PI4KAP1Q8N8J0 262 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 MYD88Q99836 296 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 UTP14AQ9BVJ6 771 aaKnown RBP12.44□□□□□ -0.42
HDAC3-208ENST00000476739 CHMP4AQ9BY43 222 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 NYXQ9GZU5 481 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 MAP3K2Q9Y2U5 619 aa12.44□□□□□ -0.42
HDAC3-208ENST00000476739 IBTKQ9P2D0 1353 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-208ENST00000476739 KLRG2A4D1S0 409 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-208ENST00000476739 SRGNP10124 158 aa12.43□□□□□ -0.42
HDAC3-208ENST00000476739 DALRD3Q5D0E6 543 aaKnown RBP12.43□□□□□ -0.42
HDAC3-208ENST00000476739 ZNF622Q969S3 477 aaKnown RBP eCLIP12.43□□□□□ -0.42
HDAC3-208ENST00000476739 METTL22Q9BUU2 404 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-208ENST00000476739 ARFGEF1Q9Y6D6 1849 aa12.42□□□□□ -0.42
HDAC3-208ENST00000476739 DDX58O95786 925 aaKnown RBP12.42□□□□□ -0.42
HDAC3-208ENST00000476739 FKBP5Q13451 457 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-208ENST00000476739 RTL5Q5HYW3 569 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-208ENST00000476739 MRPL50Q8N5N7 158 aaKnown RBP12.42□□□□□ -0.42
HDAC3-208ENST00000476739 FAM89AQ96GI7 184 aa12.42□□□□□ -0.42
HDAC3-208ENST00000476739 TRMT112Q9UI30 125 aaKnown RBP12.42□□□□□ -0.42
HDAC3-208ENST00000476739 CACNA1SQ13698 1873 aa12.42□□□□□ -0.42
HDAC3-208ENST00000476739 F6X3S4 739 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 GRIN3BO60391 1043 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 IGKV5-2P06315 115 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 HCLS1P14317 486 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-208ENST00000476739 TRIM28Q13263 835 aaKnown RBP12.41□□□□□ -0.42
HDAC3-208ENST00000476739 CRY2Q49AN0 593 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 SLC10A5Q5PT55 438 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 SSH1Q8WYL5 1049 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 JARID2Q92833 1246 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-208ENST00000476739 MASTLQ96GX5 879 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 BCL2L13Q9BXK5 485 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 SLX4Q8IY92 1834 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 LAMB2P55268 1798 aa12.41□□□□□ -0.42
HDAC3-208ENST00000476739 SH3TC1Q8TE82 1336 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 DDX60Q8IY21 1712 aaKnown RBP12.4□□□□□ -0.42
HDAC3-208ENST00000476739 CWF19L2Q2TBE0 894 aaKnown RBP12.4□□□□□ -0.42
HDAC3-208ENST00000476739 STYK1Q6J9G0 422 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 SLC51AQ86UW1 340 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 TTLL6Q8N841 843 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 ZNF219Q9P2Y4 722 aaPredicted RBP12.4□□□□□ -0.42
HDAC3-208ENST00000476739 PDZRN3Q9UPQ7 1066 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 CHD4Q14839 1912 aa12.4□□□□□ -0.42
HDAC3-208ENST00000476739 ZBED9Q6R2W3 1325 aa12.39□□□□□ -0.43
HDAC3-208ENST00000476739 RIC1Q4ADV7 1423 aa12.39□□□□□ -0.43
HDAC3-208ENST00000476739 NPR1P16066 1061 aa12.39□□□□□ -0.43
HDAC3-208ENST00000476739 CCDC191Q8NCU4 936 aa12.39□□□□□ -0.43
HDAC3-208ENST00000476739 DNAAF4Q8WXU2 420 aa12.39□□□□□ -0.43
HDAC3-208ENST00000476739 NEURL1BA8MQ27 555 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 C21orf2O43822 256 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 PRPF40BQ6NWY9 871 aaKnown RBP12.38□□□□□ -0.43
HDAC3-208ENST00000476739 OLFM4Q6UX06 510 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 ARHGAP27Q6ZUM4 889 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 CNKSR1Q969H4 720 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 NLRP3Q96P20 1036 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 CWC25Q9NXE8 425 aaPredicted RBP12.38□□□□□ -0.43
HDAC3-208ENST00000476739 TAF1P21675 1872 aa12.38□□□□□ -0.43
HDAC3-208ENST00000476739 RNF123Q5XPI4 1314 aa12.37□□□□□ -0.43
HDAC3-208ENST00000476739 YY1P25490 414 aa12.37□□□□□ -0.43
HDAC3-208ENST00000476739 ZBTB38Q8NAP3 1195 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-208ENST00000476739 C7orf43Q8WVR3 580 aa12.37□□□□□ -0.43
HDAC3-208ENST00000476739 COL4A1P02462 1669 aa12.37□□□□□ -0.43
HDAC3-208ENST00000476739 IRS4O14654 1257 aaPredicted RBP12.36□□□□□ -0.43
HDAC3-208ENST00000476739 PCCAP05165 728 aaPredicted RBP12.36□□□□□ -0.43
HDAC3-208ENST00000476739 HOXA10P31260 410 aaPredicted RBP12.36□□□□□ -0.43
HDAC3-208ENST00000476739 PRELPP51888 382 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 RASSF7Q02833 373 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 NEXNQ0ZGT2 675 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 GCKRQ14397 625 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 ALDH1L2Q3SY69 923 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 BEND3Q5T5X7 828 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 RPGRQ92834 1020 aaKnown RBP12.36□□□□□ -0.43
HDAC3-208ENST00000476739 SMC4Q9NTJ3 1288 aa12.36□□□□□ -0.43
HDAC3-208ENST00000476739 NFKBIEO00221 500 aa12.35□□□□□ -0.43
HDAC3-208ENST00000476739 CT47B1P0C2W7 299 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-208ENST00000476739 RARSP54136 660 aaKnown RBP12.35□□□□□ -0.43
HDAC3-208ENST00000476739 LINS1Q8NG48 757 aa12.35□□□□□ -0.43
HDAC3-208ENST00000476739 SBF1O95248 1867 aa12.35□□□□□ -0.43
HDAC3-208ENST00000476739 ABCC4O15439 1325 aa12.35□□□□□ -0.43
HDAC3-208ENST00000476739 FER1L6Q2WGJ9 1857 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 H7C1W4 665 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 ALDH1B1P30837 517 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 CASP7P55210 303 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 SF3B3Q15393 1217 aaKnown RBP12.34□□□□□ -0.43
HDAC3-208ENST00000476739 SLC4A10Q6U841 1118 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 RBM17Q96I25 401 aaKnown RBP12.34□□□□□ -0.43
HDAC3-208ENST00000476739 CRAMP1Q96RY5 1269 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 NOB1Q9ULX3 412 aaKnown RBP12.34□□□□□ -0.43
HDAC3-208ENST00000476739 CDHR2Q9BYE9 1310 aa12.34□□□□□ -0.43
HDAC3-208ENST00000476739 BCAR3O75815 825 aa12.33□□□□□ -0.44
HDAC3-208ENST00000476739 UBE3BQ7Z3V4 1068 aa12.33□□□□□ -0.44
HDAC3-208ENST00000476739 CCDC85AQ96PX6 553 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-208ENST00000476739 SNED1Q8TER0 1413 aa12.33□□□□□ -0.44
HDAC3-208ENST00000476739 PTPRCP08575 1304 aa12.33□□□□□ -0.44
HDAC3-208ENST00000476739 CCDC88AQ3V6T2 1871 aa12.32□□□□□ -0.44
HDAC3-208ENST00000476739 PPEF1O14829 653 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-208ENST00000476739 PDE8AO60658 829 aa12.32□□□□□ -0.44
HDAC3-208ENST00000476739 CELF1Q92879 486 aaKnown RBP12.32□□□□□ -0.44
HDAC3-208ENST00000476739 SEC31BQ9NQW1 1179 aa12.32□□□□□ -0.44
HDAC3-208ENST00000476739 BRPF1P55201 1214 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms