RNA–Protein interactions for RNA: ENST00000476259.1

RAPGEF3-208, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 3

Gene RAPGEF3, Length 824 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-208ENST00000476259 NMRK2Q9NPI5 230 aa23.18■■□□□ 1.3
RAPGEF3-208ENST00000476259 LTBP3Q9NS15 1303 aa23.17■■□□□ 1.3
RAPGEF3-208ENST00000476259 WWC1Q8IX03 1113 aa23.17■■□□□ 1.3
RAPGEF3-208ENST00000476259 UTP14AQ9BVJ6 771 aaKnown RBP23.17■■□□□ 1.3
RAPGEF3-208ENST00000476259 TAOK3Q9H2K8 898 aa23.17■■□□□ 1.3
RAPGEF3-208ENST00000476259 HYPKQ9NX55 129 aa23.17■■□□□ 1.3
RAPGEF3-208ENST00000476259 TCIRG1Q13488 830 aa23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 CCDC93Q567U6 631 aa23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 C8orf58Q8NAV2 365 aa23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 PLBD2Q8NHP8 589 aa23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 C7orf43Q8WVR3 580 aa23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 RPGRQ92834 1020 aaKnown RBP23.16■■□□□ 1.3
RAPGEF3-208ENST00000476259 ANKRD13DQ6ZTN6 518 aa23.15■■□□□ 1.3
RAPGEF3-208ENST00000476259 NLRP10Q86W26 655 aa23.15■■□□□ 1.3
RAPGEF3-208ENST00000476259 DDX60Q8IY21 1712 aaKnown RBP23.15■■□□□ 1.3
RAPGEF3-208ENST00000476259 RNF123Q5XPI4 1314 aa23.14■■□□□ 1.3
RAPGEF3-208ENST00000476259 TSR2Q969E8 191 aaKnown RBP23.14■■□□□ 1.29
RAPGEF3-208ENST00000476259 NCBP3Q53F19 620 aaKnown RBP23.13■■□□□ 1.29
RAPGEF3-208ENST00000476259 HOXA10P31260 410 aaPredicted RBP23.12■■□□□ 1.29
RAPGEF3-208ENST00000476259 OLFM4Q6UX06 510 aa23.12■■□□□ 1.29
RAPGEF3-208ENST00000476259 C3orf67Q6ZVT6 689 aa23.12■■□□□ 1.29
RAPGEF3-208ENST00000476259 NLRP3Q96P20 1036 aa23.12■■□□□ 1.29
RAPGEF3-208ENST00000476259 GLTPD2A6NH11 291 aa23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 SLC10A5Q5PT55 438 aa23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 FAM9BQ8IZU0 186 aa23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 TSPYL6Q8N831 410 aa23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 RBM17Q96I25 401 aaKnown RBP23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 PHAXQ9H814 394 aaKnown RBP23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 RRAGCQ9HB90 399 aa23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 TRMT112Q9UI30 125 aaKnown RBP23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 SALL2Q9Y467 1007 aaPredicted RBP23.11■■□□□ 1.29
RAPGEF3-208ENST00000476259 IL16Q14005 1332 aa23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 TOMM70O94826 608 aa23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 FKBP4Q02790 459 aaKnown RBP eCLIP23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 CCDC30Q5VVM6 783 aa23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 CHMP4AQ9BY43 222 aa23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 TAF1P21675 1872 aa23.1■■□□□ 1.29
RAPGEF3-208ENST00000476259 WDR90Q96KV7 1748 aa23.09■■□□□ 1.29
RAPGEF3-208ENST00000476259 GOLGA2Q08379 1002 aa23.09■■□□□ 1.29
RAPGEF3-208ENST00000476259 RTKN2Q8IZC4 609 aa23.09■■□□□ 1.29
RAPGEF3-208ENST00000476259 ZNF428Q96B54 188 aa23.09■■□□□ 1.29
RAPGEF3-208ENST00000476259 CRAMP1Q96RY5 1269 aa23.09■■□□□ 1.29
RAPGEF3-208ENST00000476259 SH3TC1Q8TE82 1336 aa23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 ATP5J2-PTCD1G3V325 749 aa23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 RIC3Q7Z5B4 369 aa23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 C16orf71Q8IYS4 520 aaPredicted RBP23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 SYNE4Q8N205 404 aa23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 ISCA1Q9BUE6 129 aa23.08■■□□□ 1.29
RAPGEF3-208ENST00000476259 SNED1Q8TER0 1413 aa23.08■■□□□ 1.28
RAPGEF3-208ENST00000476259 CACNA1FO60840 1977 aa23.07■■□□□ 1.28
RAPGEF3-208ENST00000476259 HCLS1P14317 486 aaPredicted RBP23.07■■□□□ 1.28
RAPGEF3-208ENST00000476259 DPY19L2Q6NUT2 758 aa23.07■■□□□ 1.28
RAPGEF3-208ENST00000476259 ZNF277Q9NRM2 450 aaPredicted RBP23.06■■□□□ 1.28
RAPGEF3-208ENST00000476259 PPEF1O14829 653 aaPredicted RBP23.05■■□□□ 1.28
RAPGEF3-208ENST00000476259 TWISTNBQ3B726 338 aaPredicted RBP23.05■■□□□ 1.28
RAPGEF3-208ENST00000476259 CC2D2BQ6DHV5 1058 aa23.05■■□□□ 1.28
RAPGEF3-208ENST00000476259 WDR63Q8IWG1 891 aa23.05■■□□□ 1.28
RAPGEF3-208ENST00000476259 TCERG1O14776 1098 aaKnown RBP23.04■■□□□ 1.28
RAPGEF3-208ENST00000476259 ABCC4O15439 1325 aa23.04■■□□□ 1.28
RAPGEF3-208ENST00000476259 FANCIQ9NVI1 1328 aa23.04■■□□□ 1.28
RAPGEF3-208ENST00000476259 DDX58O95786 925 aaKnown RBP23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 HSPA6P17066 643 aa23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 RBM46Q8TBY0 533 aaKnown RBP23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 FAM89AQ96GI7 184 aa23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 PSMD1Q99460 953 aa23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 STK31Q9BXU1 1019 aa23.03■■□□□ 1.28
RAPGEF3-208ENST00000476259 VEGFAP15692 232 aaPredicted RBP23.02■■□□□ 1.28
RAPGEF3-208ENST00000476259 IARSP41252 1262 aaKnown RBP23.02■■□□□ 1.28
RAPGEF3-208ENST00000476259 TRIM28Q13263 835 aaKnown RBP23.02■■□□□ 1.28
RAPGEF3-208ENST00000476259 SLC51AQ86UW1 340 aa23.02■■□□□ 1.28
RAPGEF3-208ENST00000476259 MYD88Q99836 296 aa23.02■■□□□ 1.28
RAPGEF3-208ENST00000476259 GRIPAP1Q4V328 841 aa23.01■■□□□ 1.27
RAPGEF3-208ENST00000476259 RTL5Q5HYW3 569 aaPredicted RBP23.01■■□□□ 1.27
RAPGEF3-208ENST00000476259 SCN4AP35499 1836 aa23.01■■□□□ 1.27
RAPGEF3-208ENST00000476259 LRRC37AA6NMS7 1700 aa23■■□□□ 1.27
RAPGEF3-208ENST00000476259 DDX46Q7L014 1031 aaKnown RBP23■■□□□ 1.27
RAPGEF3-208ENST00000476259 DDNO94850 711 aaPredicted RBP22.99■■□□□ 1.27
RAPGEF3-208ENST00000476259 TMX4Q9H1E5 349 aaPredicted RBP22.99■■□□□ 1.27
RAPGEF3-208ENST00000476259 ATP6V0A2Q9Y487 856 aa22.99■■□□□ 1.27
RAPGEF3-208ENST00000476259 MYH3P11055 1940 aa22.98■■□□□ 1.27
RAPGEF3-208ENST00000476259 POTECB2RU33 542 aa22.98■■□□□ 1.27
RAPGEF3-208ENST00000476259 METTL22Q9BUU2 404 aaPredicted RBP22.98■■□□□ 1.27
RAPGEF3-208ENST00000476259 MAP3K2Q9Y2U5 619 aa22.98■■□□□ 1.27
RAPGEF3-208ENST00000476259 COL4A5P29400 1685 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 IRS4O14654 1257 aaPredicted RBP22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 BBOX1O75936 387 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 FSTL1Q12841 308 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 GRAPQ13588 217 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 KSR2Q6VAB6 950 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 ZBTB38Q8NAP3 1195 aaPredicted RBP22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 CCDC191Q8NCU4 936 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 GRAPLQ8TC17 118 aaPredicted RBP22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 SPINK5Q9NQ38 1064 aaPredicted RBP22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 ZNF541Q9H0D2 1346 aa22.97■■□□□ 1.27
RAPGEF3-208ENST00000476259 PI4KAP2A4QPH2 592 aa22.96■■□□□ 1.27
RAPGEF3-208ENST00000476259 SLC4A2P04920 1241 aa22.96■■□□□ 1.27
RAPGEF3-208ENST00000476259 EXOSC9Q06265 439 aaKnown RBP22.96■■□□□ 1.27
RAPGEF3-208ENST00000476259 SF3B3Q15393 1217 aaKnown RBP22.96■■□□□ 1.27
RAPGEF3-208ENST00000476259 PI4KAP1Q8N8J0 262 aa22.96■■□□□ 1.27
RAPGEF3-208ENST00000476259 JDP2Q8WYK2 163 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms