RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	RPN1	P04843	607 aa	Known RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	SAFB2	Q14151	953 aa	Known RBP eCLIP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	ODR4	Q5SWX8	454 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	KIAA1614	Q5VZ46	1190 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	PDXDC2P	Q6P474	469 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	UNC5D	Q6UXZ4	953 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	KIAA1211	Q6ZU35	1233 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	PARP9	Q8IXQ6	854 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	SH3KBP1	Q96B97	665 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	IQCG	Q9H095	443 aa	Known RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	PTPRH	Q9HD43	1115 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	FSD2	A1L4K1	749 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	GOLGA6L6	A8MZA4	724 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	ZNF24	P17028	368 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	RPL17	P18621	184 aa	Known RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	CFAP70	Q5T0N1	1121 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	BHMT	Q93088	406 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	RNPC3	Q96LT9	517 aa	Known RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	CEP89	Q96ST8	783 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	TRIM6	Q9C030	488 aa	Predicted RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	ABCG4	Q9H172	646 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	RPAP3	Q9H6T3	665 aa	Predicted RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	ZSWIM4	Q9H7M6	989 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	VRTN	Q9H8Y1	702 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	PICK1	Q9NRD5	415 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	INTU	Q9ULD6	942 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	TBX3	O15119	743 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	SPTLC2	O15270	562 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	VCAM1	P19320	739 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	BPIFB3	P59826	476 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	SHROOM1	Q2M3G4	852 aa	Predicted RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	MYLK4	Q86YV6	388 aa	Predicted RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	LILRB2	Q8N423	598 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC89	Q8N998	374 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	PRKAG2	Q9UGJ0	569 aa		4.14	□□□□□ -1.75
UBR3-208	ENST00000474426	XPO7	Q9UIA9	1087 aa	Known RBP	4.14	□□□□□ -1.75
UBR3-208	ENST00000474426		A0A1W2PRQ8	180 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426		Q3C1V9	767 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	MCM10	Q7L590	875 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	MYOCD	Q8IZQ8	938 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	NACA2	Q9H009	215 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TRPV5	Q9NQA5	729 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	INCENP	Q9NQS7	918 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	KIF3A	Q9Y496	699 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	hCG_1984214	I3L0E3	225 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	GLUL	P15104	373 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	BTF3	P20290	206 aa	Known RBP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	RASGRP2	Q7LDG7	609 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TRIM11	Q96F44	468 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TTC14	Q96N46	770 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	VEZT	Q9HBM0	779 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	ZMAT5	Q9UDW3	170 aa	Known RBP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TMEM95	Q3KNT9	176 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	RABL6	Q3YEC7	729 aa	Predicted RBP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	INO80D	Q53TQ3	878 aa	Predicted RBP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	PACS1	Q6VY07	963 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	ARHGAP27	Q6ZUM4	889 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TMEM151B	Q8IW70	566 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	ARL6IP6	Q8N6S5	226 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	SNX21	Q969T3	373 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	ZNF496	Q96IT1	587 aa	Predicted RBP	4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	APBA2	Q99767	749 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TMEM98	Q9Y2Y6	226 aa		4.13	□□□□□ -1.75
UBR3-208	ENST00000474426	TSPY4	P0CV99	314 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	TSPY10	P0CW01	314 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	IMPDH2	P12268	514 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	NFX1	Q12986	1120 aa	Known RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	AKNAD1	Q5T1N1	836 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	PHLDB3	Q6NSJ2	640 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	THOC1	Q96FV9	657 aa	Known RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	FAM81B	Q96LP2	452 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	IWS1	Q96ST2	819 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	TMX1	Q9H3N1	280 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	KRT38	O76015	456 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	BAIAP3	O94812	1187 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	ADCY2	Q08462	1091 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	TMED1	Q13445	227 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	ESCO1	Q5FWF5	840 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	SFMBT2	Q5VUG0	894 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	FBXO31	Q5XUX0	539 aa	Predicted RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	FAAH2	Q6GMR7	532 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	ZNF449	Q6P9G9	518 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	TSC1	Q92574	1164 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	UROC1	Q96N76	676 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	BACH2	Q9BYV9	841 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	LGR6	Q9HBX8	967 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	IKBKG	Q9Y6K9	419 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	GRXCR2	A6NFK2	248 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426		H0Y3Z8	333 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	ELL2	O00472	640 aa	Predicted RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC159	P0C7I6	412 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	PARP10	Q53GL7	1025 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	SNX32	Q86XE0	403 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	THEMIS	Q8N1K5	641 aa	Predicted RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	PRPF38A	Q8NAV1	312 aa	Known RBP	4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	ADAMTS19	Q8TE59	1207 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	C1orf74	Q96LT6	269 aa		4.12	□□□□□ -1.75
UBR3-208	ENST00000474426	PPCS	Q9HAB8	311 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms