RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 FER1L6Q2WGJ9 1857 aa13.65□□□□□ -0.22
COL4A1-203ENST00000474391 ELL2O00472 640 aaPredicted RBP13.64□□□□□ -0.23
COL4A1-203ENST00000474391 KIF3CO14782 793 aa13.64□□□□□ -0.23
COL4A1-203ENST00000474391 ALDH1B1P30837 517 aa13.64□□□□□ -0.23
COL4A1-203ENST00000474391 HOXA10P31260 410 aaPredicted RBP13.64□□□□□ -0.23
COL4A1-203ENST00000474391 ANKRD13DQ6ZTN6 518 aa13.64□□□□□ -0.23
COL4A1-203ENST00000474391 UTP14AQ9BVJ6 771 aaKnown RBP13.64□□□□□ -0.23
COL4A1-203ENST00000474391 CHMP4AQ9BY43 222 aa13.64□□□□□ -0.23
COL4A1-203ENST00000474391 SENP3-EIF4A1A0A087X0R7 540 aa13.63□□□□□ -0.23
COL4A1-203ENST00000474391 WDR63Q8IWG1 891 aa13.63□□□□□ -0.23
COL4A1-203ENST00000474391 TSPYL6Q8N831 410 aa13.63□□□□□ -0.23
COL4A1-203ENST00000474391 TSR2Q969E8 191 aaKnown RBP13.63□□□□□ -0.23
COL4A1-203ENST00000474391 ISCA1Q9BUE6 129 aa13.63□□□□□ -0.23
COL4A1-203ENST00000474391 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-203ENST00000474391 TRIM28Q13263 835 aaKnown RBP13.62□□□□□ -0.23
COL4A1-203ENST00000474391 CCDC93Q567U6 631 aa13.62□□□□□ -0.23
COL4A1-203ENST00000474391 TAOK3Q9H2K8 898 aa13.62□□□□□ -0.23
COL4A1-203ENST00000474391 SNED1Q8TER0 1413 aa13.62□□□□□ -0.23
COL4A1-203ENST00000474391 CCDC30Q5VVM6 783 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 C3orf67Q6ZVT6 689 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 FAM9BQ8IZU0 186 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 NLRP3Q96P20 1036 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 CRAMP1Q96RY5 1269 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 PHAXQ9H814 394 aaKnown RBP13.61□□□□□ -0.23
COL4A1-203ENST00000474391 CACNA1SQ13698 1873 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 KDM2BQ8NHM5 1336 aa13.61□□□□□ -0.23
COL4A1-203ENST00000474391 RPGRQ92834 1020 aaKnown RBP13.6□□□□□ -0.23
COL4A1-203ENST00000474391 NMRK2Q9NPI5 230 aa13.6□□□□□ -0.23
COL4A1-203ENST00000474391 TRMT112Q9UI30 125 aaKnown RBP13.6□□□□□ -0.23
COL4A1-203ENST00000474391 SH3TC1Q8TE82 1336 aa13.6□□□□□ -0.23
COL4A1-203ENST00000474391 FANCIQ9NVI1 1328 aa13.6□□□□□ -0.23
COL4A1-203ENST00000474391 TIAM2Q8IVF5 1701 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 FKBP4Q02790 459 aaKnown RBP eCLIP13.59□□□□□ -0.23
COL4A1-203ENST00000474391 GOLGA2Q08379 1002 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 TWISTNBQ3B726 338 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-203ENST00000474391 CC2D2BQ6DHV5 1058 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 OLFM4Q6UX06 510 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 RTKN2Q8IZC4 609 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 SYNE4Q8N205 404 aa13.59□□□□□ -0.23
COL4A1-203ENST00000474391 RBM17Q96I25 401 aaKnown RBP13.59□□□□□ -0.23
COL4A1-203ENST00000474391 GLTPD2A6NH11 291 aa13.58□□□□□ -0.24
COL4A1-203ENST00000474391 HCLS1P14317 486 aaPredicted RBP13.58□□□□□ -0.24
COL4A1-203ENST00000474391 RIC3Q7Z5B4 369 aa13.58□□□□□ -0.24
COL4A1-203ENST00000474391 DICER1Q9UPY3 1922 aaKnown RBP13.58□□□□□ -0.24
COL4A1-203ENST00000474391 CCDC88AQ3V6T2 1871 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 ATP5J2-PTCD1G3V325 749 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 TOMM70O94826 608 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 GRIPAP1Q4V328 841 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 PSMD1Q99460 953 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 SPINK5Q9NQ38 1064 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-203ENST00000474391 SALL2Q9Y467 1007 aaPredicted RBP13.57□□□□□ -0.24
COL4A1-203ENST00000474391 ZNF521Q96K83 1311 aa13.57□□□□□ -0.24
COL4A1-203ENST00000474391 LAMB2P55268 1798 aa13.56□□□□□ -0.24
COL4A1-203ENST00000474391 DDX58O95786 925 aaKnown RBP13.56□□□□□ -0.24
COL4A1-203ENST00000474391 STK31Q9BXU1 1019 aa13.56□□□□□ -0.24
COL4A1-203ENST00000474391 ABCC4O15439 1325 aa13.56□□□□□ -0.24
COL4A1-203ENST00000474391 PPEF1O14829 653 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-203ENST00000474391 VAMP4O75379 141 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 SF3B3Q15393 1217 aaKnown RBP13.55□□□□□ -0.24
COL4A1-203ENST00000474391 KSR2Q6VAB6 950 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 CCDC191Q8NCU4 936 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 FAM89AQ96GI7 184 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 METTL22Q9BUU2 404 aaPredicted RBP13.55□□□□□ -0.24
COL4A1-203ENST00000474391 RRAGCQ9HB90 399 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 ATP6V0A2Q9Y487 856 aa13.55□□□□□ -0.24
COL4A1-203ENST00000474391 DDX60Q8IY21 1712 aaKnown RBP13.55□□□□□ -0.24
COL4A1-203ENST00000474391 BBOX1O75936 387 aa13.54□□□□□ -0.24
COL4A1-203ENST00000474391 SLC4A2P04920 1241 aa13.54□□□□□ -0.24
COL4A1-203ENST00000474391 EXOSC9Q06265 439 aaKnown RBP13.54□□□□□ -0.24
COL4A1-203ENST00000474391 DPY19L2Q6NUT2 758 aa13.54□□□□□ -0.24
COL4A1-203ENST00000474391 ZBTB38Q8NAP3 1195 aaPredicted RBP13.54□□□□□ -0.24
COL4A1-203ENST00000474391 RBM46Q8TBY0 533 aaKnown RBP13.54□□□□□ -0.24
COL4A1-203ENST00000474391 MYD88Q99836 296 aa13.54□□□□□ -0.24
COL4A1-203ENST00000474391 ZNF277Q9NRM2 450 aaPredicted RBP13.54□□□□□ -0.24
COL4A1-203ENST00000474391 WDR90Q96KV7 1748 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 PI4KAP2A4QPH2 592 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 POTECB2RU33 542 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 CCER2I3L3R5 266 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 TCERG1O14776 1098 aaKnown RBP13.53□□□□□ -0.24
COL4A1-203ENST00000474391 VEGFAP15692 232 aaPredicted RBP13.53□□□□□ -0.24
COL4A1-203ENST00000474391 IARSP41252 1262 aaKnown RBP13.53□□□□□ -0.24
COL4A1-203ENST00000474391 DDX46Q7L014 1031 aaKnown RBP13.53□□□□□ -0.24
COL4A1-203ENST00000474391 G2E3Q7L622 706 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 SLC51AQ86UW1 340 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 PI4KAP1Q8N8J0 262 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 ZNF428Q96B54 188 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 MYH16Q9H6N6 1097 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 MAP3K2Q9Y2U5 619 aa13.53□□□□□ -0.24
COL4A1-203ENST00000474391 IRS4O14654 1257 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-203ENST00000474391 PCCAP05165 728 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-203ENST00000474391 HSPA6P17066 643 aa13.52□□□□□ -0.25
COL4A1-203ENST00000474391 GRAPQ13588 217 aa13.52□□□□□ -0.25
COL4A1-203ENST00000474391 SP8Q8IXZ3 490 aa13.52□□□□□ -0.25
COL4A1-203ENST00000474391 GRAPLQ8TC17 118 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-203ENST00000474391 CWC25Q9NXE8 425 aaPredicted RBP13.52□□□□□ -0.25
COL4A1-203ENST00000474391 FZD9O00144 591 aa13.51□□□□□ -0.25
COL4A1-203ENST00000474391 DDNO94850 711 aaPredicted RBP13.51□□□□□ -0.25
COL4A1-203ENST00000474391 IGKV5-2P06315 115 aa13.51□□□□□ -0.25
COL4A1-203ENST00000474391 HSP90B1P14625 803 aaKnown RBP13.51□□□□□ -0.25
COL4A1-203ENST00000474391 FLIIQ13045 1269 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms