RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 THEGQ9P2T0 379 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 CTAGE9A4FU28 777 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 MAGEA9P43362 315 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 DNA2P51530 1060 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 VAV2P52735 878 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 FAM200AQ8TCP9 573 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 PALMDQ9NP74 551 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 MAP4K4O95819 1239 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-210ENST00000473258 PRIM1P49642 420 aaKnown RBP10.28□□□□□ -0.76
COL6A3-210ENST00000473258 GCC1Q96CN9 775 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 TTC36A6NLP5 189 aa10.27□□□□□ -0.76
COL6A3-210ENST00000473258 RHOXF2BP0C7M4 288 aa10.27□□□□□ -0.76
COL6A3-210ENST00000473258 SEPT8Q92599 483 aa10.27□□□□□ -0.76
COL6A3-210ENST00000473258 RHOXF2Q9BQY4 288 aa10.27□□□□□ -0.76
COL6A3-210ENST00000473258 CHCHD3Q9NX63 227 aaKnown RBP10.27□□□□□ -0.76
COL6A3-210ENST00000473258 TXNDC9O14530 226 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 OPHN1O60890 802 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 SDCCAG8Q86SQ7 713 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 CPLX3Q8WVH0 158 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 CNKSR2Q8WXI2 1034 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 NUP88Q99567 741 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 MTUS1Q9ULD2 1270 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 ANKRD30AQ9BXX3 1397 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 ELL2O00472 640 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 DIAPH1O60610 1272 aaKnown RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 HNRNPH2P55795 449 aaKnown RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 APBB1IPQ7Z5R6 666 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-210ENST00000473258 ARHGAP24Q8N264 748 aa10.27□□□□□ -0.77
COL6A3-210ENST00000473258 SPECC1L-ADORA2AF8WAN1 911 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 TPD52L2O43399 206 aaKnown RBP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 HNRNPCP07910 306 aaKnown RBP eCLIP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 CNTROBQ8N137 903 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 CXorf38Q8TB03 319 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 DTNBP1Q96EV8 351 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 SCINQ9Y6U3 715 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 FERP16591 822 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 ATICP31939 592 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 PPP1R7Q15435 360 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 GRAMD4Q6IC98 578 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 PPP1R14CQ8TAE6 165 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 FAM212AQ96EL1 285 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 BAG1Q99933 345 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 NUF2Q9BZD4 464 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 ATAD2Q6PL18 1390 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 ZCCHC6Q5VYS8 1495 aaKnown RBP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 MACROD2A1Z1Q3 448 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 UBE2HP62256 183 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 TMCO4Q5TGY1 634 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 GKAP1Q5VSY0 366 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 ARHGEF2Q92974 986 aaKnown RBP10.26□□□□□ -0.77
COL6A3-210ENST00000473258 CCDC77Q9BR77 488 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 PPP1R9AQ9ULJ8 1098 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 ACTN2P35609 894 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 E2F5Q15329 346 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 RABEP2Q9H5N1 569 aa10.26□□□□□ -0.77
COL6A3-210ENST00000473258 PPP1R12AO14974 1030 aaPredicted RBP10.25□□□□□ -0.77
COL6A3-210ENST00000473258 PTGS1P23219 599 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 ZNF131P52739 623 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 BLVRAP53004 296 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 TRAF1Q13077 416 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 PPFIA1Q13136 1202 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 CCDC96Q2M329 555 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 SMARCC2Q8TAQ2 1214 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 MCUR1Q96AQ8 359 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 NUB1Q9Y5A7 615 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 RWDD2BP57060 319 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 VSIG1Q86XK7 387 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 TSC1Q92574 1164 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 CHUKO15111 745 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 ISM2Q6H9L7 571 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 FAN1Q9Y2M0 1017 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 SMG6Q86US8 1419 aaKnown RBP10.25□□□□□ -0.77
COL6A3-210ENST00000473258 RAB3GAP2Q9H2M9 1393 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 SPDL1Q96EA4 605 aa10.25□□□□□ -0.77
COL6A3-210ENST00000473258 UTP6Q9NYH9 597 aaKnown RBP10.25□□□□□ -0.77
COL6A3-210ENST00000473258 PUF60Q9UHX1 559 aaKnown RBP10.25□□□□□ -0.77
COL6A3-210ENST00000473258 SCOCQ9UIL1 159 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 PLEKHH1Q9ULM0 1364 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 PRC1O43663 620 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 PPFIA4O75335 1185 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 VPS36Q86VN1 386 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 CCDC43Q96MW1 224 aaKnown RBP10.24□□□□□ -0.77
COL6A3-210ENST00000473258 YIPF3Q9GZM5 350 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 CCDC57Q2TAC2 916 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 FKBP15Q5T1M5 1219 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 BCAS4Q8TDM0 211 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 TCEAL9Q9UHQ7 104 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 CCDC69A6NI79 296 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 KIAA0753Q2KHM9 967 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 DUSP27Q5VZP5 1158 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 LARP1Q6PKG0 1096 aaKnown RBP10.24□□□□□ -0.77
COL6A3-210ENST00000473258 IQCA1Q86XH1 822 aa10.24□□□□□ -0.77
COL6A3-210ENST00000473258 ATP2A2P16615 1042 aaKnown RBP10.23□□□□□ -0.77
COL6A3-210ENST00000473258 SMC1BQ8NDV3 1235 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 ATP2A3Q93084 1043 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 RAD50Q92878 1312 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 HPDP32754 393 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-210ENST00000473258 FERMT3Q86UX7 667 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 RGS22Q8NE09 1264 aa10.23□□□□□ -0.77
COL6A3-210ENST00000473258 ZCRB1Q8TBF4 217 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms