RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 SLC10A5Q5PT55 438 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 NUTM1Q86Y26 1132 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 PI4KAP1Q8N8J0 262 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 MAP3K2Q9Y2U5 619 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 ARFGEF2Q9Y6D5 1785 aa19.55■□□□□ 0.72
SDC3-203ENST00000471567 ZBED9Q6R2W3 1325 aa19.54■□□□□ 0.72
SDC3-203ENST00000471567 ATP5J2-PTCD1G3V325 749 aa19.54■□□□□ 0.72
SDC3-203ENST00000471567 SRGNP10124 158 aa19.54■□□□□ 0.72
SDC3-203ENST00000471567 BCS1LQ9Y276 419 aa19.54■□□□□ 0.72
SDC3-203ENST00000471567 ADCY9O60503 1353 aa19.54■□□□□ 0.72
SDC3-203ENST00000471567 FKBP5Q13451 457 aaPredicted RBP19.53■□□□□ 0.72
SDC3-203ENST00000471567 STYK1Q6J9G0 422 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 TTLL6Q8N841 843 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 MASTLQ96GX5 879 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 MYD88Q99836 296 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 TRMT112Q9UI30 125 aaKnown RBP19.53■□□□□ 0.72
SDC3-203ENST00000471567 WWC3Q9ULE0 1092 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 BRCA1P38398 1863 aaKnown RBP19.53■□□□□ 0.72
SDC3-203ENST00000471567 ABCC12Q96J65 1359 aa19.53■□□□□ 0.72
SDC3-203ENST00000471567 NEXNQ0ZGT2 675 aa19.52■□□□□ 0.72
SDC3-203ENST00000471567 ALDH1L2Q3SY69 923 aa19.52■□□□□ 0.72
SDC3-203ENST00000471567 CCDC191Q8NCU4 936 aa19.52■□□□□ 0.72
SDC3-203ENST00000471567 DLEC1Q9Y238 1755 aa19.52■□□□□ 0.71
SDC3-203ENST00000471567 SH3TC1Q8TE82 1336 aa19.51■□□□□ 0.71
SDC3-203ENST00000471567 NPR1P16066 1061 aa19.51■□□□□ 0.71
SDC3-203ENST00000471567 CRY2Q49AN0 593 aa19.51■□□□□ 0.71
SDC3-203ENST00000471567 CNKSR1Q969H4 720 aa19.51■□□□□ 0.71
SDC3-203ENST00000471567 ZNF622Q969S3 477 aaKnown RBP eCLIP19.51■□□□□ 0.71
SDC3-203ENST00000471567 MRPL50Q8N5N7 158 aaKnown RBP19.5■□□□□ 0.71
SDC3-203ENST00000471567 DNAAF4Q8WXU2 420 aa19.5■□□□□ 0.71
SDC3-203ENST00000471567 SSH1Q8WYL5 1049 aa19.5■□□□□ 0.71
SDC3-203ENST00000471567 NLRP3Q96P20 1036 aa19.5■□□□□ 0.71
SDC3-203ENST00000471567 CWC25Q9NXE8 425 aaPredicted RBP19.5■□□□□ 0.71
SDC3-203ENST00000471567 IGKV5-2P06315 115 aa19.48■□□□□ 0.71
SDC3-203ENST00000471567 ZBTB38Q8NAP3 1195 aaPredicted RBP19.48■□□□□ 0.71
SDC3-203ENST00000471567 COL11A2P13942 1736 aaPredicted RBP19.48■□□□□ 0.71
SDC3-203ENST00000471567 ARFGEF1Q9Y6D6 1849 aa19.47■□□□□ 0.71
SDC3-203ENST00000471567 PCCAP05165 728 aaPredicted RBP19.47■□□□□ 0.71
SDC3-203ENST00000471567 HSP90B1P14625 803 aaKnown RBP19.47■□□□□ 0.71
SDC3-203ENST00000471567 ALDH1B1P30837 517 aa19.47■□□□□ 0.71
SDC3-203ENST00000471567 HOXA10P31260 410 aaPredicted RBP19.47■□□□□ 0.71
SDC3-203ENST00000471567 SYNE4Q8N205 404 aa19.47■□□□□ 0.71
SDC3-203ENST00000471567 FAM89AQ96GI7 184 aa19.47■□□□□ 0.71
SDC3-203ENST00000471567 PTPRCP08575 1304 aa19.47■□□□□ 0.71
SDC3-203ENST00000471567 NEURL1BA8MQ27 555 aa19.46■□□□□ 0.71
SDC3-203ENST00000471567 HCLS1P14317 486 aaPredicted RBP19.46■□□□□ 0.71
SDC3-203ENST00000471567 BRPF1P55201 1214 aaPredicted RBP19.46■□□□□ 0.71
SDC3-203ENST00000471567 LINS1Q8NG48 757 aa19.46■□□□□ 0.71
SDC3-203ENST00000471567 RPGRQ92834 1020 aaKnown RBP19.46■□□□□ 0.71
SDC3-203ENST00000471567 SMC4Q9NTJ3 1288 aa19.46■□□□□ 0.71
SDC3-203ENST00000471567 TNRC6CQ9HCJ0 1690 aaKnown RBP19.46■□□□□ 0.71
SDC3-203ENST00000471567 RBM17Q96I25 401 aaKnown RBP19.45■□□□□ 0.7
SDC3-203ENST00000471567 CRAMP1Q96RY5 1269 aa19.45■□□□□ 0.7
SDC3-203ENST00000471567 F6X3S4 739 aa19.44■□□□□ 0.7
SDC3-203ENST00000471567 IRS4O14654 1257 aaPredicted RBP19.44■□□□□ 0.7
SDC3-203ENST00000471567 RARSP54136 660 aaKnown RBP19.44■□□□□ 0.7
SDC3-203ENST00000471567 CWF19L2Q2TBE0 894 aaKnown RBP19.44■□□□□ 0.7
SDC3-203ENST00000471567 PRPF40BQ6NWY9 871 aaKnown RBP19.44■□□□□ 0.7
SDC3-203ENST00000471567 ARHGAP27Q6ZUM4 889 aa19.44■□□□□ 0.7
SDC3-203ENST00000471567 C3orf67Q6ZVT6 689 aa19.44■□□□□ 0.7
SDC3-203ENST00000471567 GCKRQ14397 625 aa19.43■□□□□ 0.7
SDC3-203ENST00000471567 SF3B3Q15393 1217 aaKnown RBP19.43■□□□□ 0.7
SDC3-203ENST00000471567 BEND3Q5T5X7 828 aa19.43■□□□□ 0.7
SDC3-203ENST00000471567 SOGA3Q5TF21 947 aa19.43■□□□□ 0.7
SDC3-203ENST00000471567 BCL2L13Q9BXK5 485 aa19.43■□□□□ 0.7
SDC3-203ENST00000471567 CDHR2Q9BYE9 1310 aa19.43■□□□□ 0.7
SDC3-203ENST00000471567 H7C1W4 665 aa19.42■□□□□ 0.7
SDC3-203ENST00000471567 RTL5Q5HYW3 569 aaPredicted RBP19.42■□□□□ 0.7
SDC3-203ENST00000471567 CHD4Q14839 1912 aa19.42■□□□□ 0.7
SDC3-203ENST00000471567 C21orf2O43822 256 aa19.41■□□□□ 0.7
SDC3-203ENST00000471567 C7orf43Q8WVR3 580 aa19.41■□□□□ 0.7
SDC3-203ENST00000471567 SLX4Q8IY92 1834 aa19.4■□□□□ 0.7
SDC3-203ENST00000471567 PDE8AO60658 829 aa19.4■□□□□ 0.7
SDC3-203ENST00000471567 ALDH1L1O75891 902 aa19.4■□□□□ 0.7
SDC3-203ENST00000471567 DDX60Q8IY21 1712 aaKnown RBP19.39■□□□□ 0.7
SDC3-203ENST00000471567 GOLGB1Q14789 3259 aaKnown RBP19.39■□□□□ 0.69
SDC3-203ENST00000471567 YY1P25490 414 aa19.39■□□□□ 0.69
SDC3-203ENST00000471567 SLC4A10Q6U841 1118 aa19.39■□□□□ 0.69
SDC3-203ENST00000471567 DDX46Q7L014 1031 aaKnown RBP19.39■□□□□ 0.69
SDC3-203ENST00000471567 SRCIN1Q9C0H9 1055 aa19.39■□□□□ 0.69
SDC3-203ENST00000471567 BBOX1O75936 387 aa19.38■□□□□ 0.69
SDC3-203ENST00000471567 CC2D2BQ6DHV5 1058 aa19.38■□□□□ 0.69
SDC3-203ENST00000471567 UBE3BQ7Z3V4 1068 aa19.38■□□□□ 0.69
SDC3-203ENST00000471567 JARID2Q92833 1246 aaPredicted RBP19.38■□□□□ 0.69
SDC3-203ENST00000471567 ZNF219Q9P2Y4 722 aaPredicted RBP19.38■□□□□ 0.69
SDC3-203ENST00000471567 NOB1Q9ULX3 412 aaKnown RBP19.38■□□□□ 0.69
SDC3-203ENST00000471567 LAMB2P55268 1798 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 ABCC4O15439 1325 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 KIF16BQ96L93 1317 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 CASP7P55210 303 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 GRIPAP1Q4V328 841 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 CCDC93Q567U6 631 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 ARHGAP45Q92619 1136 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 PLA2G12BQ9BX93 195 aa19.37■□□□□ 0.69
SDC3-203ENST00000471567 API5Q9BZZ5 524 aaKnown RBP19.37■□□□□ 0.69
SDC3-203ENST00000471567 LTBP3Q9NS15 1303 aa19.36■□□□□ 0.69
SDC3-203ENST00000471567 GRAPQ13588 217 aa19.36■□□□□ 0.69
SDC3-203ENST00000471567 CCDC152Q4G0S7 254 aa19.36■□□□□ 0.69
SDC3-203ENST00000471567 RTKN2Q8IZC4 609 aa19.36■□□□□ 0.69
SDC3-203ENST00000471567 GRAPLQ8TC17 118 aaPredicted RBP19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms