RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ERVV-2B6SEH9 535 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 C21orf2O43822 256 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 SERPINB2P05120 415 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 CABP4P57796 275 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 MAP3K9P80192 1104 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 ADAMTSL1Q8N6G6 1762 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 SOS1Q07889 1333 aaPredicted RBP7.37□□□□□ -1.23
PTPN4-209ENST00000469511 SCN4AP35499 1836 aa7.37□□□□□ -1.23
PTPN4-209ENST00000469511 TNNT2P45379 298 aaPredicted RBP7.37□□□□□ -1.23
PTPN4-209ENST00000469511 ERFEQ4G0M1 354 aa7.37□□□□□ -1.23
PTPN4-209ENST00000469511 BICDL1Q6ZP65 573 aa7.37□□□□□ -1.23
PTPN4-209ENST00000469511 AEBP1Q8IUX7 1158 aa7.37□□□□□ -1.23
PTPN4-209ENST00000469511 TSKSQ9UJT2 592 aa7.37□□□□□ -1.23
PTPN4-209ENST00000469511 RGS19P49795 217 aa7.36□□□□□ -1.23
PTPN4-209ENST00000469511 SLC39A6Q13433 755 aa7.36□□□□□ -1.23
PTPN4-209ENST00000469511 ZNF530Q6P9A1 599 aaPredicted RBP7.36□□□□□ -1.23
PTPN4-209ENST00000469511 PTCD2Q8WV60 388 aaKnown RBP7.36□□□□□ -1.23
PTPN4-209ENST00000469511 ZNF622Q969S3 477 aaKnown RBP eCLIP7.36□□□□□ -1.23
PTPN4-209ENST00000469511 TAF1DQ9H5J8 278 aaPredicted RBP7.36□□□□□ -1.23
PTPN4-209ENST00000469511 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.36□□□□□ -1.23
PTPN4-209ENST00000469511 PCDH10Q9P2E7 1040 aa7.36□□□□□ -1.23
PTPN4-209ENST00000469511 ZBTB1Q9Y2K1 713 aa7.36□□□□□ -1.23
PTPN4-209ENST00000469511 TMEM88BA6NKF7 163 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 ZPR1O75312 459 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 CYP19A1P11511 503 aaPredicted RBP7.35□□□□□ -1.23
PTPN4-209ENST00000469511 MTHFSP49914 203 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 MLLT1Q03111 559 aaPredicted RBP7.35□□□□□ -1.23
PTPN4-209ENST00000469511 MAP1SQ66K74 1059 aaPredicted RBP7.35□□□□□ -1.23
PTPN4-209ENST00000469511 OLFM4Q6UX06 510 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 AIDAQ96BJ3 306 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 LGR6Q9HBX8 967 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 NARFQ9UHQ1 456 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 ARFGEF2Q9Y6D5 1785 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 LTBP1Q14766 1721 aa7.35□□□□□ -1.23
PTPN4-209ENST00000469511 ZNF541Q9H0D2 1346 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 H0YIN7 160 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 ZMYND10O75800 440 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 DEFB115Q30KQ5 88 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 EAPPQ56P03 285 aaPredicted RBP7.34□□□□□ -1.23
PTPN4-209ENST00000469511 TBC1D9BQ66K14 1250 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 TRPM7Q96QT4 1865 aa7.34□□□□□ -1.23
PTPN4-209ENST00000469511 COL15A1P39059 1388 aa7.33□□□□□ -1.24
PTPN4-209ENST00000469511 TNRC18O15417 2968 aaPredicted RBP7.33□□□□□ -1.24
PTPN4-209ENST00000469511 WDR33Q9C0J8 1336 aaKnown RBP7.33□□□□□ -1.24
PTPN4-209ENST00000469511 RASSF10A6NK89 507 aa7.33□□□□□ -1.24
PTPN4-209ENST00000469511 TBC1D12O60347 775 aa7.33□□□□□ -1.24
PTPN4-209ENST00000469511 CANXP27824 592 aaKnown RBP7.33□□□□□ -1.24
PTPN4-209ENST00000469511 PLEKHO1Q53GL0 409 aaPredicted RBP7.33□□□□□ -1.24
PTPN4-209ENST00000469511 RBM26Q5T8P6 1007 aaKnown RBP7.33□□□□□ -1.24
PTPN4-209ENST00000469511 PRR5LQ6MZQ0 368 aa7.33□□□□□ -1.24
PTPN4-209ENST00000469511 LDHDQ86WU2 507 aa7.33□□□□□ -1.24
PTPN4-209ENST00000469511 THSD7BQ9C0I4 1608 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 AOC2O75106 756 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 HSP90AB1P08238 724 aaKnown RBP7.32□□□□□ -1.24
PTPN4-209ENST00000469511 GRM1Q13255 1194 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 CYP4F22Q6NT55 531 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 SLC51AQ86UW1 340 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 CNTROBQ8N137 903 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 TAOK3Q9H2K8 898 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 COL4A5P29400 1685 aa7.32□□□□□ -1.24
PTPN4-209ENST00000469511 RNF123Q5XPI4 1314 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 UBR2Q8IWV8 1755 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 EVI5O60447 810 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 GPIHBP1Q8IV16 184 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 C7orf43Q8WVR3 580 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 MCOLN1Q9GZU1 580 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 TBC1D2BQ9UPU7 963 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 SCN7AQ01118 1682 aa7.31□□□□□ -1.24
PTPN4-209ENST00000469511 LTBP3Q9NS15 1303 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 TRAF5O00463 557 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 EPHX2P34913 555 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 EIF5P55010 431 aaKnown RBP7.3□□□□□ -1.24
PTPN4-209ENST00000469511 CST9Q5W186 159 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 SULT6B1Q6IMI4 303 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 PRPF40BQ6NWY9 871 aaKnown RBP7.3□□□□□ -1.24
PTPN4-209ENST00000469511 CAPNS2Q96L46 248 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 BRIP1Q9BX63 1249 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 SLC52A2Q9HAB3 445 aa7.3□□□□□ -1.24
PTPN4-209ENST00000469511 ZNF277Q9NRM2 450 aaPredicted RBP7.3□□□□□ -1.24
PTPN4-209ENST00000469511 ABT1Q9ULW3 272 aaKnown RBP7.3□□□□□ -1.24
PTPN4-209ENST00000469511 POLR2AP24928 1970 aaKnown RBP7.29□□□□□ -1.24
PTPN4-209ENST00000469511 ZNF316A6NFI3 1004 aaPredicted RBP7.29□□□□□ -1.24
PTPN4-209ENST00000469511 RNMTO43148 476 aaKnown RBP7.29□□□□□ -1.24
PTPN4-209ENST00000469511 SRGNP10124 158 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 OSBPP22059 807 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 PIP4K2AP48426 406 aaPredicted RBP7.29□□□□□ -1.24
PTPN4-209ENST00000469511 MAP2K1Q02750 393 aaPredicted RBP7.29□□□□□ -1.24
PTPN4-209ENST00000469511 AMOTQ4VCS5 1084 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 C1orf141Q5JVX7 400 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 ZIC5Q96T25 663 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 HACL1Q9UJ83 578 aa7.29□□□□□ -1.24
PTPN4-209ENST00000469511 BCORQ6W2J9 1755 aa7.28□□□□□ -1.24
PTPN4-209ENST00000469511 IQCA1LA6NCM1 817 aa7.28□□□□□ -1.24
PTPN4-209ENST00000469511 GRXCR2A6NFK2 248 aa7.28□□□□□ -1.24
PTPN4-209ENST00000469511 PDE6BP35913 854 aa7.28□□□□□ -1.24
PTPN4-209ENST00000469511 GPR101Q96P66 508 aaPredicted RBP7.28□□□□□ -1.24
PTPN4-209ENST00000469511 DDX21Q9NR30 783 aaKnown RBP eCLIP7.28□□□□□ -1.24
PTPN4-209ENST00000469511 ZNF330Q9Y3S2 320 aaPredicted RBP7.28□□□□□ -1.24
PTPN4-209ENST00000469511 POTEB2H3BUK9 544 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 A1BGP04217 495 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms