RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 TRMT112Q9UI30 125 aaKnown RBP23.43■■□□□ 1.34
HOXA9-203ENST00000465941 PDZRN3Q9UPQ7 1066 aa23.43■■□□□ 1.34
HOXA9-203ENST00000465941 IGKV5-2P06315 115 aa23.42■■□□□ 1.34
HOXA9-203ENST00000465941 DPEP1P16444 411 aa23.42■■□□□ 1.34
HOXA9-203ENST00000465941 SLC10A5Q5PT55 438 aa23.42■■□□□ 1.34
HOXA9-203ENST00000465941 YTHDC1Q96MU7 727 aaKnown RBP23.42■■□□□ 1.34
HOXA9-203ENST00000465941 ANKRD36CQ5JPF3 1778 aa23.42■■□□□ 1.34
HOXA9-203ENST00000465941 PXDNLA1KZ92 1463 aa23.42■■□□□ 1.34
HOXA9-203ENST00000465941 KLRG2A4D1S0 409 aaPredicted RBP23.41■■□□□ 1.34
HOXA9-203ENST00000465941 F6X3S4 739 aa23.41■■□□□ 1.34
HOXA9-203ENST00000465941 KCNA3P22001 575 aa23.41■■□□□ 1.34
HOXA9-203ENST00000465941 LINS1Q8NG48 757 aa23.41■■□□□ 1.34
HOXA9-203ENST00000465941 CWC25Q9NXE8 425 aaPredicted RBP23.41■■□□□ 1.34
HOXA9-203ENST00000465941 SH3TC1Q8TE82 1336 aa23.4■■□□□ 1.34
HOXA9-203ENST00000465941 NEURL1BA8MQ27 555 aa23.39■■□□□ 1.33
HOXA9-203ENST00000465941 H0YIN7 160 aa23.39■■□□□ 1.33
HOXA9-203ENST00000465941 CHRNA5P30532 468 aa23.39■■□□□ 1.33
HOXA9-203ENST00000465941 C2CD5Q86YS7 1000 aa23.39■■□□□ 1.33
HOXA9-203ENST00000465941 ZBTB38Q8NAP3 1195 aaPredicted RBP23.39■■□□□ 1.33
HOXA9-203ENST00000465941 NOB1Q9ULX3 412 aaKnown RBP23.39■■□□□ 1.33
HOXA9-203ENST00000465941 RIC1Q4ADV7 1423 aa23.39■■□□□ 1.33
HOXA9-203ENST00000465941 CWF19L2Q2TBE0 894 aaKnown RBP23.38■■□□□ 1.33
HOXA9-203ENST00000465941 BEND3Q5T5X7 828 aa23.38■■□□□ 1.33
HOXA9-203ENST00000465941 ARHGAP45Q92619 1136 aa23.38■■□□□ 1.33
HOXA9-203ENST00000465941 ABCC12Q96J65 1359 aa23.38■■□□□ 1.33
HOXA9-203ENST00000465941 KIF16BQ96L93 1317 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 KIAA1551Q9HCM1 1747 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 BCAR3O75815 825 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 SYNE4Q8N205 404 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 FAM89AQ96GI7 184 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 PIM2Q9P1W9 311 aa23.37■■□□□ 1.33
HOXA9-203ENST00000465941 PCCAP05165 728 aaPredicted RBP23.36■■□□□ 1.33
HOXA9-203ENST00000465941 SRGNP10124 158 aa23.36■■□□□ 1.33
HOXA9-203ENST00000465941 ANKRD31Q8N7Z5 1873 aa23.35■■□□□ 1.33
HOXA9-203ENST00000465941 GCKRQ14397 625 aa23.35■■□□□ 1.33
HOXA9-203ENST00000465941 CRY2Q49AN0 593 aa23.35■■□□□ 1.33
HOXA9-203ENST00000465941 SLC4A10Q6U841 1118 aa23.35■■□□□ 1.33
HOXA9-203ENST00000465941 NLRP3Q96P20 1036 aa23.35■■□□□ 1.33
HOXA9-203ENST00000465941 IPO8O15397 1037 aaKnown RBP23.34■■□□□ 1.33
HOXA9-203ENST00000465941 HCLS1P14317 486 aaPredicted RBP23.34■■□□□ 1.33
HOXA9-203ENST00000465941 STYK1Q6J9G0 422 aa23.34■■□□□ 1.33
HOXA9-203ENST00000465941 MASTLQ96GX5 879 aa23.34■■□□□ 1.33
HOXA9-203ENST00000465941 API5Q9BZZ5 524 aaKnown RBP23.34■■□□□ 1.33
HOXA9-203ENST00000465941 N4BP2Q86UW6 1770 aaPredicted RBP23.33■■□□□ 1.33
HOXA9-203ENST00000465941 H7C1W4 665 aa23.33■■□□□ 1.33
HOXA9-203ENST00000465941 ALDH1L1O75891 902 aa23.33■■□□□ 1.33
HOXA9-203ENST00000465941 HSP90B1P14625 803 aaKnown RBP23.33■■□□□ 1.33
HOXA9-203ENST00000465941 NPR1P16066 1061 aa23.33■■□□□ 1.33
HOXA9-203ENST00000465941 SRCIN1Q9C0H9 1055 aa23.33■■□□□ 1.33
HOXA9-203ENST00000465941 DCAF8L1A6NGE4 600 aa23.32■■□□□ 1.32
HOXA9-203ENST00000465941 IRS4O14654 1257 aaPredicted RBP23.32■■□□□ 1.32
HOXA9-203ENST00000465941 GPR162Q16538 588 aa23.32■■□□□ 1.32
HOXA9-203ENST00000465941 RTL5Q5HYW3 569 aaPredicted RBP23.32■■□□□ 1.32
HOXA9-203ENST00000465941 DALRD3Q5D0E6 543 aaKnown RBP23.31■■□□□ 1.32
HOXA9-203ENST00000465941 C3orf67Q6ZVT6 689 aa23.31■■□□□ 1.32
HOXA9-203ENST00000465941 TTLL6Q8N841 843 aa23.31■■□□□ 1.32
HOXA9-203ENST00000465941 ZNF622Q969S3 477 aaKnown RBP eCLIP23.31■■□□□ 1.32
HOXA9-203ENST00000465941 CDHR2Q9BYE9 1310 aa23.31■■□□□ 1.32
HOXA9-203ENST00000465941 YBX3P16989 372 aaKnown RBP eCLIP23.3■■□□□ 1.32
HOXA9-203ENST00000465941 HOXA10P31260 410 aaPredicted RBP23.3■■□□□ 1.32
HOXA9-203ENST00000465941 JARID2Q92833 1246 aaPredicted RBP23.3■■□□□ 1.32
HOXA9-203ENST00000465941 FRAT1Q92837 279 aaPredicted RBP23.3■■□□□ 1.32
HOXA9-203ENST00000465941 CNKSR1Q969H4 720 aa23.3■■□□□ 1.32
HOXA9-203ENST00000465941 CASP7P55210 303 aa23.29■■□□□ 1.32
HOXA9-203ENST00000465941 ATF7IPQ6VMQ6 1270 aa23.29■■□□□ 1.32
HOXA9-203ENST00000465941 PELP1Q8IZL8 1130 aaKnown RBP23.29■■□□□ 1.32
HOXA9-203ENST00000465941 RPGRQ92834 1020 aaKnown RBP23.29■■□□□ 1.32
HOXA9-203ENST00000465941 RCAN3Q9UKA8 241 aa23.29■■□□□ 1.32
HOXA9-203ENST00000465941 WWC3Q9ULE0 1092 aa23.29■■□□□ 1.32
HOXA9-203ENST00000465941 BCS1LQ9Y276 419 aa23.29■■□□□ 1.32
HOXA9-203ENST00000465941 PDE8AO60658 829 aa23.28■■□□□ 1.32
HOXA9-203ENST00000465941 ALDH1B1P30837 517 aa23.28■■□□□ 1.32
HOXA9-203ENST00000465941 CCT4P50991 539 aaKnown RBP23.28■■□□□ 1.32
HOXA9-203ENST00000465941 SF3B3Q15393 1217 aaKnown RBP23.28■■□□□ 1.32
HOXA9-203ENST00000465941 UBE3BQ7Z3V4 1068 aa23.28■■□□□ 1.32
HOXA9-203ENST00000465941 TNRC6CQ9HCJ0 1690 aaKnown RBP23.28■■□□□ 1.32
HOXA9-203ENST00000465941 TRIM27P14373 513 aa23.27■■□□□ 1.32
HOXA9-203ENST00000465941 ZKSCAN2Q63HK3 967 aa23.27■■□□□ 1.32
HOXA9-203ENST00000465941 RBM17Q96I25 401 aaKnown RBP23.27■■□□□ 1.32
HOXA9-203ENST00000465941 DLEC1Q9Y238 1755 aa23.27■■□□□ 1.32
HOXA9-203ENST00000465941 COL11A2P13942 1736 aaPredicted RBP23.26■■□□□ 1.31
HOXA9-203ENST00000465941 GRM8O00222 908 aa23.26■■□□□ 1.31
HOXA9-203ENST00000465941 GRIN3BO60391 1043 aa23.26■■□□□ 1.31
HOXA9-203ENST00000465941 CRAMP1Q96RY5 1269 aa23.26■■□□□ 1.31
HOXA9-203ENST00000465941 C9orf78Q9NZ63 289 aaPredicted RBP23.26■■□□□ 1.31
HOXA9-203ENST00000465941 PLA2G12BQ9BX93 195 aa23.25■■□□□ 1.31
HOXA9-203ENST00000465941 BRCA1P38398 1863 aaKnown RBP23.25■■□□□ 1.31
HOXA9-203ENST00000465941 UTYO14607 1347 aa23.25■■□□□ 1.31
HOXA9-203ENST00000465941 ABCC4O15439 1325 aa23.25■■□□□ 1.31
HOXA9-203ENST00000465941 INTS3Q68E01 1043 aaKnown RBP23.24■■□□□ 1.31
HOXA9-203ENST00000465941 PRPF40BQ6NWY9 871 aaKnown RBP23.24■■□□□ 1.31
HOXA9-203ENST00000465941 DDX60Q8IY21 1712 aaKnown RBP23.24■■□□□ 1.31
HOXA9-203ENST00000465941 CTSWP56202 376 aa23.22■■□□□ 1.31
HOXA9-203ENST00000465941 DDX46Q7L014 1031 aaKnown RBP23.22■■□□□ 1.31
HOXA9-203ENST00000465941 C7orf43Q8WVR3 580 aa23.22■■□□□ 1.31
HOXA9-203ENST00000465941 USP44Q9H0E7 712 aa23.22■■□□□ 1.31
HOXA9-203ENST00000465941 NBPF7P0C2Y1 421 aaPredicted RBP23.21■■□□□ 1.31
HOXA9-203ENST00000465941 CCDC152Q4G0S7 254 aa23.21■■□□□ 1.31
HOXA9-203ENST00000465941 TTLL11Q8NHH1 800 aa23.21■■□□□ 1.31
HOXA9-203ENST00000465941 LAMB2P55268 1798 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms