RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TWISTNBQ3B726 338 aaPredicted RBP16.81■□□□□ 0.28
COL28A1-206ENST00000465339 PPP1R42Q7Z4L9 355 aa16.81■□□□□ 0.28
COL28A1-206ENST00000465339 TSPYL6Q8N831 410 aa16.81■□□□□ 0.28
COL28A1-206ENST00000465339 TTLL6Q8N841 843 aa16.81■□□□□ 0.28
COL28A1-206ENST00000465339 FANCIQ9NVI1 1328 aa16.8■□□□□ 0.28
COL28A1-206ENST00000465339 TCIRG1Q13488 830 aa16.8■□□□□ 0.28
COL28A1-206ENST00000465339 ARHGAP27Q6ZUM4 889 aa16.8■□□□□ 0.28
COL28A1-206ENST00000465339 MYH16Q9H6N6 1097 aa16.8■□□□□ 0.28
COL28A1-206ENST00000465339 GOLGB1Q14789 3259 aaKnown RBP16.8■□□□□ 0.28
COL28A1-206ENST00000465339 UBN2Q6ZU65 1347 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 CACNA1FO60840 1977 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 KLRG2A4D1S0 409 aaPredicted RBP16.79■□□□□ 0.28
COL28A1-206ENST00000465339 SRGNP10124 158 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 SUSD4Q5VX71 490 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 STYK1Q6J9G0 422 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 ZNF622Q969S3 477 aaKnown RBP eCLIP16.79■□□□□ 0.28
COL28A1-206ENST00000465339 MASTLQ96GX5 879 aa16.79■□□□□ 0.28
COL28A1-206ENST00000465339 CNKSR1Q969H4 720 aa16.78■□□□□ 0.28
COL28A1-206ENST00000465339 STK31Q9BXU1 1019 aa16.78■□□□□ 0.28
COL28A1-206ENST00000465339 UTRNP46939 3433 aa16.77■□□□□ 0.28
COL28A1-206ENST00000465339 RNF123Q5XPI4 1314 aa16.77■□□□□ 0.28
COL28A1-206ENST00000465339 ZNF521Q96K83 1311 aa16.77■□□□□ 0.28
COL28A1-206ENST00000465339 COL11A2P13942 1736 aaPredicted RBP16.77■□□□□ 0.28
COL28A1-206ENST00000465339 ERFEQ4G0M1 354 aa16.77■□□□□ 0.28
COL28A1-206ENST00000465339 UTP14AQ9BVJ6 771 aaKnown RBP16.77■□□□□ 0.28
COL28A1-206ENST00000465339 PHAXQ9H814 394 aaKnown RBP16.77■□□□□ 0.28
COL28A1-206ENST00000465339 NTSR2O95665 410 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 DDX58O95786 925 aaKnown RBP16.76■□□□□ 0.27
COL28A1-206ENST00000465339 NPR1P16066 1061 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 EXOSC9Q06265 439 aaKnown RBP16.76■□□□□ 0.27
COL28A1-206ENST00000465339 RIC3Q7Z5B4 369 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 NLRP10Q86W26 655 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 NUTM1Q86Y26 1132 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 MIER1Q8N108 512 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 ARFGEF2Q9Y6D5 1785 aa16.76■□□□□ 0.27
COL28A1-206ENST00000465339 PITPNM1O00562 1244 aa16.75■□□□□ 0.27
COL28A1-206ENST00000465339 VAMP4O75379 141 aa16.75■□□□□ 0.27
COL28A1-206ENST00000465339 SLC10A5Q5PT55 438 aa16.75■□□□□ 0.27
COL28A1-206ENST00000465339 RIC1Q4ADV7 1423 aa16.75■□□□□ 0.27
COL28A1-206ENST00000465339 ALDH1B1P30837 517 aa16.74■□□□□ 0.27
COL28A1-206ENST00000465339 TRIM28Q13263 835 aaKnown RBP16.74■□□□□ 0.27
COL28A1-206ENST00000465339 ISCA1Q9BUE6 129 aa16.74■□□□□ 0.27
COL28A1-206ENST00000465339 TRMT112Q9UI30 125 aaKnown RBP16.74■□□□□ 0.27
COL28A1-206ENST00000465339 CACNA1SQ13698 1873 aa16.73■□□□□ 0.27
COL28A1-206ENST00000465339 SLX4Q8IY92 1834 aa16.73■□□□□ 0.27
COL28A1-206ENST00000465339 CRY2Q49AN0 593 aa16.73■□□□□ 0.27
COL28A1-206ENST00000465339 ZNF784Q8NCA9 323 aaPredicted RBP16.73■□□□□ 0.27
COL28A1-206ENST00000465339 SBF1O95248 1867 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 E9PSI1 815 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 SOGA3Q5TF21 947 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 PRPF40BQ6NWY9 871 aaKnown RBP16.72■□□□□ 0.27
COL28A1-206ENST00000465339 CHRDL2Q6WN34 429 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 NLRP3Q96P20 1036 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 ABCC12Q96J65 1359 aa16.72■□□□□ 0.27
COL28A1-206ENST00000465339 ATP5J2-PTCD1G3V325 749 aa16.71■□□□□ 0.27
COL28A1-206ENST00000465339 TCERG1O14776 1098 aaKnown RBP16.71■□□□□ 0.27
COL28A1-206ENST00000465339 C21orf2O43822 256 aa16.71■□□□□ 0.27
COL28A1-206ENST00000465339 HOXA10P31260 410 aaPredicted RBP16.71■□□□□ 0.27
COL28A1-206ENST00000465339 KSR2Q6VAB6 950 aa16.71■□□□□ 0.27
COL28A1-206ENST00000465339 TNRC6CQ9HCJ0 1690 aaKnown RBP16.71■□□□□ 0.27
COL28A1-206ENST00000465339 SH3TC1Q8TE82 1336 aa16.7■□□□□ 0.26
COL28A1-206ENST00000465339 RPGRQ92834 1020 aaKnown RBP16.7■□□□□ 0.26
COL28A1-206ENST00000465339 METTL22Q9BUU2 404 aaPredicted RBP16.7■□□□□ 0.26
COL28A1-206ENST00000465339 FER1L6Q2WGJ9 1857 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 CCDC88AQ3V6T2 1871 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 PI4KAP2A4QPH2 592 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 PI4KAP1Q8N8J0 262 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 CCDC191Q8NCU4 936 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
COL28A1-206ENST00000465339 RBM17Q96I25 401 aaKnown RBP16.69■□□□□ 0.26
COL28A1-206ENST00000465339 CRAMP1Q96RY5 1269 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 MYD88Q99836 296 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 MAP3K2Q9Y2U5 619 aa16.69■□□□□ 0.26
COL28A1-206ENST00000465339 ADCY9O60503 1353 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 NEXNQ0ZGT2 675 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 C9orf131Q5VYM1 1079 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 G2E3Q7L622 706 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 C7orf43Q8WVR3 580 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 CLEC11AQ9Y240 323 aa16.68■□□□□ 0.26
COL28A1-206ENST00000465339 LAMB2P55268 1798 aa16.67■□□□□ 0.26
COL28A1-206ENST00000465339 HCLS1P14317 486 aaPredicted RBP16.67■□□□□ 0.26
COL28A1-206ENST00000465339 HSP90B1P14625 803 aaKnown RBP16.67■□□□□ 0.26
COL28A1-206ENST00000465339 LMNB1P20700 586 aa16.67■□□□□ 0.26
COL28A1-206ENST00000465339 FLIIQ13045 1269 aa16.67■□□□□ 0.26
COL28A1-206ENST00000465339 SYNE4Q8N205 404 aa16.67■□□□□ 0.26
COL28A1-206ENST00000465339 FAM89AQ96GI7 184 aa16.67■□□□□ 0.26
COL28A1-206ENST00000465339 CCDC93Q567U6 631 aa16.66■□□□□ 0.26
COL28A1-206ENST00000465339 CC2D2BQ6DHV5 1058 aa16.66■□□□□ 0.26
COL28A1-206ENST00000465339 ZBTB38Q8NAP3 1195 aaPredicted RBP16.66■□□□□ 0.26
COL28A1-206ENST00000465339 CWC25Q9NXE8 425 aaPredicted RBP16.66■□□□□ 0.26
COL28A1-206ENST00000465339 RNF181Q9P0P0 153 aa16.66■□□□□ 0.26
COL28A1-206ENST00000465339 LTBP3Q9NS15 1303 aa16.66■□□□□ 0.26
COL28A1-206ENST00000465339 DDX60Q8IY21 1712 aaKnown RBP16.65■□□□□ 0.26
COL28A1-206ENST00000465339 NFKBIEO00221 500 aa16.65■□□□□ 0.26
COL28A1-206ENST00000465339 RASSF7Q02833 373 aa16.65■□□□□ 0.26
COL28A1-206ENST00000465339 FKBP5Q13451 457 aaPredicted RBP16.65■□□□□ 0.26
COL28A1-206ENST00000465339 GRIPAP1Q4V328 841 aa16.65■□□□□ 0.26
COL28A1-206ENST00000465339 C3orf67Q6ZVT6 689 aa16.65■□□□□ 0.26
COL28A1-206ENST00000465339 TRMT2AQ8IZ69 625 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms