RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 CCDC171Q6TFL3 1326 aa12.33□□□□□ -0.43
PTPRE-205ENST00000463727 ANKRD24Q8TF21 1146 aa12.33□□□□□ -0.43
PTPRE-205ENST00000463727 FBXW7Q969H0 707 aa12.33□□□□□ -0.43
PTPRE-205ENST00000463727 PLEKHG1Q9ULL1 1385 aa12.33□□□□□ -0.44
PTPRE-205ENST00000463727 TERF1P54274 439 aa12.33□□□□□ -0.44
PTPRE-205ENST00000463727 BEND3Q5T5X7 828 aa12.33□□□□□ -0.44
PTPRE-205ENST00000463727 RASEFQ8IZ41 740 aa12.33□□□□□ -0.44
PTPRE-205ENST00000463727 CDC42BPGQ6DT37 1551 aa12.33□□□□□ -0.44
PTPRE-205ENST00000463727 KCNQ3O43525 872 aa12.32□□□□□ -0.44
PTPRE-205ENST00000463727 WASHC4Q2M389 1173 aa12.32□□□□□ -0.44
PTPRE-205ENST00000463727 DDX19AQ9NUU7 478 aaKnown RBP12.32□□□□□ -0.44
PTPRE-205ENST00000463727 HMG20BQ9P0W2 317 aa12.32□□□□□ -0.44
PTPRE-205ENST00000463727 KDM4AO75164 1064 aa12.32□□□□□ -0.44
PTPRE-205ENST00000463727 PROSER2Q86WR7 435 aaPredicted RBP12.32□□□□□ -0.44
PTPRE-205ENST00000463727 RNMTO43148 476 aaKnown RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 LSG1Q9H089 658 aaKnown RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 TPD52L1Q16890 204 aaPredicted RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 ZNF396Q96N95 335 aaPredicted RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 NEK1Q96PY6 1258 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 ME1P48163 572 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 PRIMPOLQ96LW4 560 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 FAM227BQ96M60 508 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 BICC1Q9H694 974 aaKnown RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 CABP4P57796 275 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 PTH1RQ03431 593 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 SLC39A6Q13433 755 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 COPS6Q7L5N1 327 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 JARID2Q92833 1246 aaPredicted RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 TM6SF1Q9BZW5 370 aa12.31□□□□□ -0.44
PTPRE-205ENST00000463727 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
PTPRE-205ENST00000463727 KIF20BQ96Q89 1820 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 GCP02774 474 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 SYNE3Q6ZMZ3 975 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 UBE3BQ7Z3V4 1068 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 RALYLQ86SE5 291 aaKnown RBP12.3□□□□□ -0.44
PTPRE-205ENST00000463727 FAM200AQ8TCP9 573 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 XAGE3Q8WTP9 111 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 PDLIM2Q96JY6 352 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 NAT10Q9H0A0 1025 aaKnown RBP12.3□□□□□ -0.44
PTPRE-205ENST00000463727 DDX21Q9NR30 783 aaKnown RBP eCLIP12.3□□□□□ -0.44
PTPRE-205ENST00000463727 DACT1Q9NYF0 836 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 USP31Q70CQ4 1352 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 A0A087WZG4 1122 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 CPLX2Q6PUV4 134 aaKnown RBP12.3□□□□□ -0.44
PTPRE-205ENST00000463727 ANKRD13DQ6ZTN6 518 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 PI4K2BQ8TCG2 481 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 OVOS2A0A0J9YW53 1432 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 OVOS2Q6IE36 1432 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 ATF3P18847 181 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 TRDNQ13061 729 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 POLA2Q14181 598 aa12.3□□□□□ -0.44
PTPRE-205ENST00000463727 ZNF165P49910 485 aa12.29□□□□□ -0.44
PTPRE-205ENST00000463727 FAM173BQ6P4H8 233 aa12.29□□□□□ -0.44
PTPRE-205ENST00000463727 NPHP3Q7Z494 1330 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 ATP5J2-PTCD1G3V325 749 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 SLC27A2O14975 620 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 PTCD1O75127 700 aaKnown RBP12.28□□□□□ -0.44
PTPRE-205ENST00000463727 APPP05067 770 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 HMGB1P09429 215 aaKnown RBP12.28□□□□□ -0.44
PTPRE-205ENST00000463727 ME3Q16798 604 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 ADCK5Q3MIX3 580 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 BRF1Q92994 677 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 SUCLG2Q96I99 432 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 ZSWIM6Q9HCJ5 1215 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 GIGYF1O75420 1035 aaPredicted RBP12.28□□□□□ -0.44
PTPRE-205ENST00000463727 TYRO3Q06418 890 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 KLHDC4Q8TBB5 520 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 MTMR6Q9Y217 621 aa12.28□□□□□ -0.44
PTPRE-205ENST00000463727 STK38Q15208 465 aa12.27□□□□□ -0.44
PTPRE-205ENST00000463727 DDX46Q7L014 1031 aaKnown RBP12.27□□□□□ -0.44
PTPRE-205ENST00000463727 PIBF1Q8WXW3 757 aa12.27□□□□□ -0.44
PTPRE-205ENST00000463727 DHX16O60231 1041 aaKnown RBP12.27□□□□□ -0.45
PTPRE-205ENST00000463727 FKBP4Q02790 459 aaKnown RBP eCLIP12.27□□□□□ -0.45
PTPRE-205ENST00000463727 ANO6Q4KMQ2 910 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 FILIP1Q7Z7B0 1213 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 EAF2Q96CJ1 260 aaPredicted RBP12.27□□□□□ -0.45
PTPRE-205ENST00000463727 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.45
PTPRE-205ENST00000463727 ZMYND15Q9H091 742 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 KDRP35968 1356 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 KRT28Q7Z3Y7 464 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 PKNOX2Q96KN3 472 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 FMNL2Q96PY5 1086 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 LRRC2Q9BYS8 371 aa12.27□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC158Q5M9N0 1113 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 ZSCAN16Q9H4T2 348 aaPredicted RBP12.26□□□□□ -0.45
PTPRE-205ENST00000463727 TOMM22Q9NS69 142 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 CEP126Q9P2H0 1117 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 NRXN3Q9Y4C0 1643 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 SETD1AO15047 1707 aaKnown RBP12.26□□□□□ -0.45
PTPRE-205ENST00000463727 SNRPA1P09661 255 aaKnown RBP12.26□□□□□ -0.45
PTPRE-205ENST00000463727 RPS6KB1P23443 525 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC112Q8NEF3 446 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 TECPR2O15040 1411 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 GOLIM4O00461 696 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 CCT2P78371 535 aaKnown RBP12.26□□□□□ -0.45
PTPRE-205ENST00000463727 Q6ZUG5 572 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 CCDC186Q7Z3E2 898 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 IFNL2Q8IZJ0 200 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 NFATC2IPQ8NCF5 419 aa12.26□□□□□ -0.45
PTPRE-205ENST00000463727 CLIP2Q9UDT6 1046 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms