RNA–Protein interactions for RNA: ENST00000462892.1

SEMA4A-209, Transcript of semaphorin 4A, human

TSL 3

Gene SEMA4A, Length 993 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4A-209	ENST00000462892	CCDC30	Q5VVM6	783 aa		32.54	■■■□□ 2.8
SEMA4A-209	ENST00000462892	CHMP4A	Q9BY43	222 aa		32.54	■■■□□ 2.8
SEMA4A-209	ENST00000462892	ANKRD36C	Q5JPF3	1778 aa		32.53	■■■□□ 2.8
SEMA4A-209	ENST00000462892	ARFGEF2	Q9Y6D5	1785 aa		32.53	■■■□□ 2.8
SEMA4A-209	ENST00000462892	LMNB1	P20700	586 aa		32.52	■■■□□ 2.8
SEMA4A-209	ENST00000462892	C7orf43	Q8WVR3	580 aa		32.52	■■■□□ 2.8
SEMA4A-209	ENST00000462892	CACNA1S	Q13698	1873 aa		32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	ALDH1B1	P30837	517 aa		32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	TWISTNB	Q3B726	338 aa	Predicted RBP	32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SLC10A5	Q5PT55	438 aa		32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	RNF123	Q5XPI4	1314 aa		32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	FANCI	Q9NVI1	1328 aa		32.51	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SBF1	O95248	1867 aa		32.5	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SOGA3	Q5TF21	947 aa		32.5	■■■□□ 2.79
SEMA4A-209	ENST00000462892	C3orf67	Q6ZVT6	689 aa		32.5	■■■□□ 2.79
SEMA4A-209	ENST00000462892	GOLGA2	Q08379	1002 aa		32.49	■■■□□ 2.79
SEMA4A-209	ENST00000462892	RPGR	Q92834	1020 aa	Known RBP	32.49	■■■□□ 2.79
SEMA4A-209	ENST00000462892	ISCA1	Q9BUE6	129 aa		32.49	■■■□□ 2.79
SEMA4A-209	ENST00000462892	RIC3	Q7Z5B4	369 aa		32.48	■■■□□ 2.79
SEMA4A-209	ENST00000462892	NLRP3	Q96P20	1036 aa		32.48	■■■□□ 2.79
SEMA4A-209	ENST00000462892	TRMT112	Q9UI30	125 aa	Known RBP	32.48	■■■□□ 2.79
SEMA4A-209	ENST00000462892	ATP5J2-PTCD1	G3V325	749 aa		32.47	■■■□□ 2.79
SEMA4A-209	ENST00000462892	TCERG1	O14776	1098 aa	Known RBP	32.47	■■■□□ 2.79
SEMA4A-209	ENST00000462892	HOXA10	P31260	410 aa	Predicted RBP	32.47	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SYNE4	Q8N205	404 aa		32.47	■■■□□ 2.79
SEMA4A-209	ENST00000462892	ZNF428	Q96B54	188 aa		32.47	■■■□□ 2.79
SEMA4A-209	ENST00000462892	C1QTNF8	P60827	252 aa		32.46	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.46	■■■□□ 2.79
SEMA4A-209	ENST00000462892	LTBP3	Q9NS15	1303 aa		32.46	■■■□□ 2.79
SEMA4A-209	ENST00000462892	CCDC93	Q567U6	631 aa		32.45	■■■□□ 2.79
SEMA4A-209	ENST00000462892	TAOK3	Q9H2K8	898 aa		32.45	■■■□□ 2.79
SEMA4A-209	ENST00000462892	FER1L6	Q2WGJ9	1857 aa		32.45	■■■□□ 2.79
SEMA4A-209	ENST00000462892	SH3TC1	Q8TE82	1336 aa		32.45	■■■□□ 2.78
SEMA4A-209	ENST00000462892	HCLS1	P14317	486 aa	Predicted RBP	32.44	■■■□□ 2.78
SEMA4A-209	ENST00000462892	OLFM4	Q6UX06	510 aa		32.44	■■■□□ 2.78
SEMA4A-209	ENST00000462892	RBM17	Q96I25	401 aa	Known RBP	32.44	■■■□□ 2.78
SEMA4A-209	ENST00000462892	STK31	Q9BXU1	1019 aa		32.44	■■■□□ 2.78
SEMA4A-209	ENST00000462892	CRAMP1	Q96RY5	1269 aa		32.43	■■■□□ 2.78
SEMA4A-209	ENST00000462892	EXOSC9	Q06265	439 aa	Known RBP	32.42	■■■□□ 2.78
SEMA4A-209	ENST00000462892	TRIM28	Q13263	835 aa	Known RBP	32.42	■■■□□ 2.78
SEMA4A-209	ENST00000462892	ZC3H4	Q9UPT8	1303 aa	Known RBP	32.42	■■■□□ 2.78
SEMA4A-209	ENST00000462892	KIF3C	O14782	793 aa		32.41	■■■□□ 2.78
SEMA4A-209	ENST00000462892	DDX58	O95786	925 aa	Known RBP	32.41	■■■□□ 2.78
SEMA4A-209	ENST00000462892	CCER2	I3L3R5	266 aa		32.4	■■■□□ 2.78
SEMA4A-209	ENST00000462892	FAM89A	Q96GI7	184 aa		32.4	■■■□□ 2.78
SEMA4A-209	ENST00000462892	MYD88	Q99836	296 aa		32.4	■■■□□ 2.78
SEMA4A-209	ENST00000462892	NMRK2	Q9NPI5	230 aa		32.4	■■■□□ 2.78
SEMA4A-209	ENST00000462892	VAMP4	O75379	141 aa		32.39	■■■□□ 2.78
SEMA4A-209	ENST00000462892	RTKN2	Q8IZC4	609 aa		32.39	■■■□□ 2.78
SEMA4A-209	ENST00000462892	MYH16	Q9H6N6	1097 aa		32.39	■■■□□ 2.78
SEMA4A-209	ENST00000462892	KDM2B	Q8NHM5	1336 aa		32.38	■■■□□ 2.77
SEMA4A-209	ENST00000462892	ZNF521	Q96K83	1311 aa		32.38	■■■□□ 2.77
SEMA4A-209	ENST00000462892	SLC4A2	P04920	1241 aa		32.38	■■■□□ 2.77
SEMA4A-209	ENST00000462892	FKBP4	Q02790	459 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
SEMA4A-209	ENST00000462892	CCDC88A	Q3V6T2	1871 aa		32.37	■■■□□ 2.77
SEMA4A-209	ENST00000462892	KSR2	Q6VAB6	950 aa		32.36	■■■□□ 2.77
SEMA4A-209	ENST00000462892	G2E3	Q7L622	706 aa		32.36	■■■□□ 2.77
SEMA4A-209	ENST00000462892	METTL22	Q9BUU2	404 aa	Predicted RBP	32.36	■■■□□ 2.77
SEMA4A-209	ENST00000462892	MAP3K2	Q9Y2U5	619 aa		32.36	■■■□□ 2.77
SEMA4A-209	ENST00000462892	TIAM2	Q8IVF5	1701 aa		32.35	■■■□□ 2.77
SEMA4A-209	ENST00000462892	PPEF1	O14829	653 aa	Predicted RBP	32.35	■■■□□ 2.77
SEMA4A-209	ENST00000462892	RTL5	Q5HYW3	569 aa	Predicted RBP	32.35	■■■□□ 2.77
SEMA4A-209	ENST00000462892	ABCC4	O15439	1325 aa		32.34	■■■□□ 2.77
SEMA4A-209	ENST00000462892	PI4KAP2	A4QPH2	592 aa		32.34	■■■□□ 2.77
SEMA4A-209	ENST00000462892	CC2D2B	Q6DHV5	1058 aa		32.34	■■■□□ 2.77
SEMA4A-209	ENST00000462892	PI4KAP1	Q8N8J0	262 aa		32.34	■■■□□ 2.77
SEMA4A-209	ENST00000462892	SNED1	Q8TER0	1413 aa		32.34	■■■□□ 2.77
SEMA4A-209	ENST00000462892	LAMB2	P55268	1798 aa		32.33	■■■□□ 2.77
SEMA4A-209	ENST00000462892	SLC51A	Q86UW1	340 aa		32.33	■■■□□ 2.77
SEMA4A-209	ENST00000462892	CCDC191	Q8NCU4	936 aa		32.33	■■■□□ 2.77
SEMA4A-209	ENST00000462892	ZNF277	Q9NRM2	450 aa	Predicted RBP	32.33	■■■□□ 2.77
SEMA4A-209	ENST00000462892	GLTPD2	A6NH11	291 aa		32.32	■■■□□ 2.76
SEMA4A-209	ENST00000462892	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.31	■■■□□ 2.76
SEMA4A-209	ENST00000462892	DDX60	Q8IY21	1712 aa	Known RBP	32.31	■■■□□ 2.76
SEMA4A-209	ENST00000462892	IRS4	O14654	1257 aa	Predicted RBP	32.3	■■■□□ 2.76
SEMA4A-209	ENST00000462892	DDX46	Q7L014	1031 aa	Known RBP	32.3	■■■□□ 2.76
SEMA4A-209	ENST00000462892	RRAGC	Q9HB90	399 aa		32.3	■■■□□ 2.76
SEMA4A-209	ENST00000462892	CWC25	Q9NXE8	425 aa	Predicted RBP	32.3	■■■□□ 2.76
SEMA4A-209	ENST00000462892	FLII	Q13045	1269 aa		32.29	■■■□□ 2.76
SEMA4A-209	ENST00000462892	PSMD1	Q99460	953 aa		32.29	■■■□□ 2.76
SEMA4A-209	ENST00000462892	DICER1	Q9UPY3	1922 aa	Known RBP	32.29	■■■□□ 2.76
SEMA4A-209	ENST00000462892	BBOX1	O75936	387 aa		32.28	■■■□□ 2.76
SEMA4A-209	ENST00000462892	SF3B3	Q15393	1217 aa	Known RBP	32.28	■■■□□ 2.76
SEMA4A-209	ENST00000462892	GRIPAP1	Q4V328	841 aa		32.28	■■■□□ 2.76
SEMA4A-209	ENST00000462892	ATP6V0A2	Q9Y487	856 aa		32.28	■■■□□ 2.76
SEMA4A-209	ENST00000462892	PCCA	P05165	728 aa	Predicted RBP	32.27	■■■□□ 2.76
SEMA4A-209	ENST00000462892	IGKV5-2	P06315	115 aa		32.27	■■■□□ 2.76
SEMA4A-209	ENST00000462892	GRAP	Q13588	217 aa		32.27	■■■□□ 2.76
SEMA4A-209	ENST00000462892	DPY19L2	Q6NUT2	758 aa		32.27	■■■□□ 2.76
SEMA4A-209	ENST00000462892	GRAPL	Q8TC17	118 aa	Predicted RBP	32.27	■■■□□ 2.76
SEMA4A-209	ENST00000462892	IARS	P41252	1262 aa	Known RBP	32.26	■■■□□ 2.75
SEMA4A-209	ENST00000462892	NEXN	Q0ZGT2	675 aa		32.26	■■■□□ 2.75
SEMA4A-209	ENST00000462892	JARID2	Q92833	1246 aa	Predicted RBP	32.26	■■■□□ 2.75
SEMA4A-209	ENST00000462892	TMX4	Q9H1E5	349 aa	Predicted RBP	32.25	■■■□□ 2.75
SEMA4A-209	ENST00000462892	TOMM70	O94826	608 aa		32.24	■■■□□ 2.75
SEMA4A-209	ENST00000462892	FKBP5	Q13451	457 aa	Predicted RBP	32.24	■■■□□ 2.75
SEMA4A-209	ENST00000462892	DIEXF	Q68CQ4	756 aa	Known RBP	32.24	■■■□□ 2.75
SEMA4A-209	ENST00000462892	SP8	Q8IXZ3	490 aa		32.23	■■■□□ 2.75
SEMA4A-209	ENST00000462892	HSP90B1	P14625	803 aa	Known RBP	32.22	■■■□□ 2.75
SEMA4A-209	ENST00000462892	CWF19L2	Q2TBE0	894 aa	Known RBP	32.22	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms