RNA–Protein interactions for RNA: ENST00000462212.5

ITSN1-222, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,102 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-222	ENST00000462212	CNKSR1	Q969H4	720 aa		10.78	□□□□□ -0.68
ITSN1-222	ENST00000462212	SBF1	O95248	1867 aa		10.78	□□□□□ -0.68
ITSN1-222	ENST00000462212	GTF2E1	P29083	439 aa	Predicted RBP	10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	TRIM28	Q13263	835 aa	Known RBP	10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	C7orf43	Q8WVR3	580 aa		10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	ISCA1	Q9BUE6	129 aa		10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	UTP14A	Q9BVJ6	771 aa	Known RBP	10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	PHAX	Q9H814	394 aa	Known RBP	10.77	□□□□□ -0.69
ITSN1-222	ENST00000462212	FER1L6	Q2WGJ9	1857 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	CACNA1F	O60840	1977 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	NFKBIE	O00221	500 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	HOXA10	P31260	410 aa	Predicted RBP	10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	GOLGA2	Q08379	1002 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	PRPF40B	Q6NWY9	871 aa	Known RBP	10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	MYH16	Q9H6N6	1097 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	CACNA1S	Q13698	1873 aa		10.76	□□□□□ -0.69
ITSN1-222	ENST00000462212	C21orf2	O43822	256 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	VAMP4	O75379	141 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	PRELP	P51888	382 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	EXOSC9	Q06265	439 aa	Known RBP	10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	C9orf131	Q5VYM1	1079 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	DIEXF	Q68CQ4	756 aa	Known RBP	10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	C3orf67	Q6ZVT6	689 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	SH3TC1	Q8TE82	1336 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	LTBP3	Q9NS15	1303 aa		10.75	□□□□□ -0.69
ITSN1-222	ENST00000462212	ALDH1B1	P30837	517 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	RASSF7	Q02833	373 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	SOGA3	Q5TF21	947 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	IFFO2	Q5TF58	517 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	RIC3	Q7Z5B4	369 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	STK31	Q9BXU1	1019 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	TRMT112	Q9UI30	125 aa	Known RBP	10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	SNED1	Q8TER0	1413 aa		10.74	□□□□□ -0.69
ITSN1-222	ENST00000462212	DDX60	Q8IY21	1712 aa	Known RBP	10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	LAMB2	P55268	1798 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	ATP5J2-PTCD1	G3V325	749 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	DDX58	O95786	925 aa	Known RBP	10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	SLC4A2	P04920	1241 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	LMNB1	P20700	586 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	KSR2	Q6VAB6	950 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	G2E3	Q7L622	706 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	SYNE4	Q8N205	404 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	NLRP3	Q96P20	1036 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	CRAMP1	Q96RY5	1269 aa		10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	METTL22	Q9BUU2	404 aa	Predicted RBP	10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.73	□□□□□ -0.69
ITSN1-222	ENST00000462212	CCDC88A	Q3V6T2	1871 aa		10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	TCERG1	O14776	1098 aa	Known RBP	10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	CCDC191	Q8NCU4	936 aa		10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	RPGR	Q92834	1020 aa	Known RBP	10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	RNF181	Q9P0P0	153 aa		10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	ZNF219	Q9P2Y4	722 aa	Predicted RBP	10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	DICER1	Q9UPY3	1922 aa	Known RBP	10.72	□□□□□ -0.69
ITSN1-222	ENST00000462212	PI4KAP2	A4QPH2	592 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212		E9PSI1	815 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	HCLS1	P14317	486 aa	Predicted RBP	10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	SLFN5	Q08AF3	891 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	FLII	Q13045	1269 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	CCDC93	Q567U6	631 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	CC2D2B	Q6DHV5	1058 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	MIER1	Q8N108	512 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	PI4KAP1	Q8N8J0	262 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	FAM89A	Q96GI7	184 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	RBM17	Q96I25	401 aa	Known RBP	10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	MYD88	Q99836	296 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	TAOK3	Q9H2K8	898 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	MAP3K2	Q9Y2U5	619 aa		10.71	□□□□□ -0.69
ITSN1-222	ENST00000462212	ABCC4	O15439	1325 aa		10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	IGKV5-2	P06315	115 aa		10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	SF3B3	Q15393	1217 aa	Known RBP	10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	OLFM4	Q6UX06	510 aa		10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	TRMT2A	Q8IZ69	625 aa	Known RBP	10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	RTKN2	Q8IZC4	609 aa		10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	TIAM2	Q8IVF5	1701 aa		10.7	□□□□□ -0.7
ITSN1-222	ENST00000462212	IRS4	O14654	1257 aa	Predicted RBP	10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	PCCA	P05165	728 aa	Predicted RBP	10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	GRIPAP1	Q4V328	841 aa		10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	ZNF428	Q96B54	188 aa		10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	PSMD1	Q99460	953 aa		10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	CWC25	Q9NXE8	425 aa	Predicted RBP	10.69	□□□□□ -0.7
ITSN1-222	ENST00000462212	CDHR2	Q9BYE9	1310 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	NEURL1B	A8MQ27	555 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	KIF3C	O14782	793 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	PPEF1	O14829	653 aa	Predicted RBP	10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	BBOX1	O75936	387 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	NEXN	Q0ZGT2	675 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	FKBP5	Q13451	457 aa	Predicted RBP	10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	ZNF526	Q8TF50	670 aa	Predicted RBP	10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	DNAAF4	Q8WXU2	420 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	CDCA7L	Q96GN5	454 aa		10.68	□□□□□ -0.7
ITSN1-222	ENST00000462212	HSP90B1	P14625	803 aa	Known RBP	10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	GRAP	Q13588	217 aa		10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	CWF19L2	Q2TBE0	894 aa	Known RBP	10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	RTL5	Q5HYW3	569 aa	Predicted RBP	10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	DDX46	Q7L014	1031 aa	Known RBP	10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	SLC51A	Q86UW1	340 aa		10.67	□□□□□ -0.7
ITSN1-222	ENST00000462212	GRAPL	Q8TC17	118 aa	Predicted RBP	10.67	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms