RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 CALD1Q05682 793 aaKnown RBP24.65■■□□□ 1.54
VARS-220ENST00000461874 HSP90AB3PQ58FF7 597 aa24.65■■□□□ 1.54
VARS-220ENST00000461874 DUSP27Q5VZP5 1158 aa24.65■■□□□ 1.54
VARS-220ENST00000461874 RTKN2Q8IZC4 609 aa24.65■■□□□ 1.54
VARS-220ENST00000461874 IFT57Q9NWB7 429 aa24.65■■□□□ 1.54
VARS-220ENST00000461874 TNRC6CQ9HCJ0 1690 aaKnown RBP24.65■■□□□ 1.54
VARS-220ENST00000461874 ZNF316A6NFI3 1004 aaPredicted RBP24.64■■□□□ 1.54
VARS-220ENST00000461874 FKBP4Q02790 459 aaKnown RBP eCLIP24.64■■□□□ 1.54
VARS-220ENST00000461874 FSTL1Q12841 308 aa24.64■■□□□ 1.54
VARS-220ENST00000461874 RPGRQ92834 1020 aaKnown RBP24.64■■□□□ 1.54
VARS-220ENST00000461874 CACNA1SQ13698 1873 aa24.64■■□□□ 1.53
VARS-220ENST00000461874 APLP1P51693 650 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 GNAI1P63096 354 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 TCIRG1Q13488 830 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 SLC10A5Q5PT55 438 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 C3orf67Q6ZVT6 689 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 DBF4Q9UBU7 674 aaPredicted RBP24.63■■□□□ 1.53
VARS-220ENST00000461874 TIAM2Q8IVF5 1701 aa24.63■■□□□ 1.53
VARS-220ENST00000461874 NLRP10Q86W26 655 aa24.62■■□□□ 1.53
VARS-220ENST00000461874 POTECB2RU33 542 aa24.61■■□□□ 1.53
VARS-220ENST00000461874 RBM17Q96I25 401 aaKnown RBP24.61■■□□□ 1.53
VARS-220ENST00000461874 NLRP3Q96P20 1036 aa24.61■■□□□ 1.53
VARS-220ENST00000461874 CRAMP1Q96RY5 1269 aa24.61■■□□□ 1.53
VARS-220ENST00000461874 ZNF277Q9NRM2 450 aaPredicted RBP24.61■■□□□ 1.53
VARS-220ENST00000461874 RNF123Q5XPI4 1314 aa24.61■■□□□ 1.53
VARS-220ENST00000461874 CC2D2BQ6DHV5 1058 aa24.6■■□□□ 1.53
VARS-220ENST00000461874 SMC1BQ8NDV3 1235 aa24.6■■□□□ 1.53
VARS-220ENST00000461874 PLBD2Q8NHP8 589 aa24.6■■□□□ 1.53
VARS-220ENST00000461874 HYPKQ9NX55 129 aa24.6■■□□□ 1.53
VARS-220ENST00000461874 DICER1Q9UPY3 1922 aaKnown RBP24.6■■□□□ 1.53
VARS-220ENST00000461874 ANKRD13DQ6ZTN6 518 aa24.59■■□□□ 1.53
VARS-220ENST00000461874 SYNE4Q8N205 404 aa24.59■■□□□ 1.53
VARS-220ENST00000461874 PSMD1Q99460 953 aa24.58■■□□□ 1.53
VARS-220ENST00000461874 SNED1Q8TER0 1413 aa24.58■■□□□ 1.53
VARS-220ENST00000461874 DDNO94850 711 aaPredicted RBP24.57■■□□□ 1.52
VARS-220ENST00000461874 TRMT112Q9UI30 125 aaKnown RBP24.57■■□□□ 1.52
VARS-220ENST00000461874 WDR90Q96KV7 1748 aa24.56■■□□□ 1.52
VARS-220ENST00000461874 ELL2O00472 640 aaPredicted RBP24.56■■□□□ 1.52
VARS-220ENST00000461874 IARSP41252 1262 aaKnown RBP24.56■■□□□ 1.52
VARS-220ENST00000461874 GRIPAP1Q4V328 841 aa24.56■■□□□ 1.52
VARS-220ENST00000461874 PPEF1O14829 653 aaPredicted RBP24.55■■□□□ 1.52
VARS-220ENST00000461874 ANP32CO43423 234 aa24.55■■□□□ 1.52
VARS-220ENST00000461874 HCLS1P14317 486 aaPredicted RBP24.55■■□□□ 1.52
VARS-220ENST00000461874 C8orf58Q8NAV2 365 aa24.55■■□□□ 1.52
VARS-220ENST00000461874 SH3TC1Q8TE82 1336 aa24.55■■□□□ 1.52
VARS-220ENST00000461874 CCDC27Q2M243 656 aa24.54■■□□□ 1.52
VARS-220ENST00000461874 ISCA1Q9BUE6 129 aa24.54■■□□□ 1.52
VARS-220ENST00000461874 MRS2Q9HD23 443 aa24.54■■□□□ 1.52
VARS-220ENST00000461874 DNAJC5GQ8N7S2 189 aa24.53■■□□□ 1.52
VARS-220ENST00000461874 TCERG1O14776 1098 aaKnown RBP24.52■■□□□ 1.52
VARS-220ENST00000461874 SLC51AQ86UW1 340 aa24.52■■□□□ 1.52
VARS-220ENST00000461874 L3MBTL3Q96JM7 780 aaPredicted RBP24.52■■□□□ 1.52
VARS-220ENST00000461874 ZNF541Q9H0D2 1346 aa24.52■■□□□ 1.52
VARS-220ENST00000461874 ANKRD36CQ5JPF3 1778 aa24.52■■□□□ 1.52
VARS-220ENST00000461874 ATP5J2-PTCD1G3V325 749 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 FZD9O00144 591 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 WWC1Q8IX03 1113 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 ZNF428Q96B54 188 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 ATP6V0A2Q9Y487 856 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 ABCC4O15439 1325 aa24.51■■□□□ 1.51
VARS-220ENST00000461874 TRIM28Q13263 835 aaKnown RBP24.5■■□□□ 1.51
VARS-220ENST00000461874 CHMP4AQ9BY43 222 aa24.5■■□□□ 1.51
VARS-220ENST00000461874 PHAXQ9H814 394 aaKnown RBP24.5■■□□□ 1.51
VARS-220ENST00000461874 BBOX1O75936 387 aa24.49■■□□□ 1.51
VARS-220ENST00000461874 GOLGA2Q08379 1002 aa24.49■■□□□ 1.51
VARS-220ENST00000461874 NCBP3Q53F19 620 aaKnown RBP24.49■■□□□ 1.51
VARS-220ENST00000461874 JDP2Q8WYK2 163 aa24.49■■□□□ 1.51
VARS-220ENST00000461874 TMX4Q9H1E5 349 aaPredicted RBP24.49■■□□□ 1.51
VARS-220ENST00000461874 IQCA1LA6NCM1 817 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 HTRA3P83110 453 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 CCDC30Q5VVM6 783 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 DDX46Q7L014 1031 aaKnown RBP24.48■■□□□ 1.51
VARS-220ENST00000461874 RIC3Q7Z5B4 369 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 TSPYL6Q8N831 410 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 FAM89AQ96GI7 184 aa24.48■■□□□ 1.51
VARS-220ENST00000461874 TSR2Q969E8 191 aaKnown RBP24.47■■□□□ 1.51
VARS-220ENST00000461874 SP8Q8IXZ3 490 aa24.46■■□□□ 1.51
VARS-220ENST00000461874 GRAPQ13588 217 aa24.45■■□□□ 1.5
VARS-220ENST00000461874 LARGE2Q8N3Y3 721 aa24.45■■□□□ 1.5
VARS-220ENST00000461874 GRAPLQ8TC17 118 aaPredicted RBP24.45■■□□□ 1.5
VARS-220ENST00000461874 TAF1DQ9H5J8 278 aaPredicted RBP24.45■■□□□ 1.5
VARS-220ENST00000461874 IL16Q14005 1332 aa24.44■■□□□ 1.5
VARS-220ENST00000461874 POTEIP0CG38 1075 aa24.44■■□□□ 1.5
VARS-220ENST00000461874 POTEJP0CG39 1038 aa24.44■■□□□ 1.5
VARS-220ENST00000461874 SF3B3Q15393 1217 aaKnown RBP24.44■■□□□ 1.5
VARS-220ENST00000461874 CHADLQ6NUI6 762 aa24.44■■□□□ 1.5
VARS-220ENST00000461874 GPC2Q8N158 579 aa24.44■■□□□ 1.5
VARS-220ENST00000461874 COL4A5P29400 1685 aa24.43■■□□□ 1.5
VARS-220ENST00000461874 EIF6P56537 245 aaKnown RBP24.43■■□□□ 1.5
VARS-220ENST00000461874 RTFDC1Q9BY42 306 aaPredicted RBP24.43■■□□□ 1.5
VARS-220ENST00000461874 VPS33BQ9H267 617 aa24.43■■□□□ 1.5
VARS-220ENST00000461874 HACL1Q9UJ83 578 aa24.43■■□□□ 1.5
VARS-220ENST00000461874 IRS4O14654 1257 aaPredicted RBP24.42■■□□□ 1.5
VARS-220ENST00000461874 DDX58O95786 925 aaKnown RBP24.42■■□□□ 1.5
VARS-220ENST00000461874 RTL5Q5HYW3 569 aaPredicted RBP24.42■■□□□ 1.5
VARS-220ENST00000461874 KLRG1Q96E93 195 aa24.42■■□□□ 1.5
VARS-220ENST00000461874 MYD88Q99836 296 aa24.42■■□□□ 1.5
VARS-220ENST00000461874 PPIP5K2O43314 1243 aa24.41■■□□□ 1.5
VARS-220ENST00000461874 DPP8Q6V1X1 898 aaPredicted RBP24.41■■□□□ 1.5
VARS-220ENST00000461874 TMC4Q7Z404 712 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 306.1 ms