RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ABCC12Q96J65 1359 aa29.18■■■□□ 2.26
CCDC28B-203ENST00000461819 H0YIN7 160 aa29.18■■■□□ 2.26
CCDC28B-203ENST00000461819 ISCA1Q9BUE6 129 aa29.18■■■□□ 2.26
CCDC28B-203ENST00000461819 CACNA1SQ13698 1873 aa29.18■■■□□ 2.26
CCDC28B-203ENST00000461819 GOLGB1Q14789 3259 aaKnown RBP29.17■■■□□ 2.26
CCDC28B-203ENST00000461819 ERFEQ4G0M1 354 aa29.17■■■□□ 2.26
CCDC28B-203ENST00000461819 METTL22Q9BUU2 404 aaPredicted RBP29.17■■■□□ 2.26
CCDC28B-203ENST00000461819 TRMT112Q9UI30 125 aaKnown RBP29.16■■■□□ 2.26
CCDC28B-203ENST00000461819 PDZRN3Q9UPQ7 1066 aa29.16■■■□□ 2.26
CCDC28B-203ENST00000461819 RNF123Q5XPI4 1314 aa29.16■■■□□ 2.26
CCDC28B-203ENST00000461819 NEXNQ0ZGT2 675 aa29.15■■■□□ 2.26
CCDC28B-203ENST00000461819 SSH1Q8WYL5 1049 aa29.15■■■□□ 2.26
CCDC28B-203ENST00000461819 BCL2L13Q9BXK5 485 aa29.15■■■□□ 2.26
CCDC28B-203ENST00000461819 PIM2Q9P1W9 311 aa29.15■■■□□ 2.26
CCDC28B-203ENST00000461819 ARFGEF1Q9Y6D6 1849 aa29.15■■■□□ 2.26
CCDC28B-203ENST00000461819 KCNA3P22001 575 aa29.14■■■□□ 2.26
CCDC28B-203ENST00000461819 ALDH1L2Q3SY69 923 aa29.14■■■□□ 2.26
CCDC28B-203ENST00000461819 SMC4Q9NTJ3 1288 aa29.14■■■□□ 2.26
CCDC28B-203ENST00000461819 RIC1Q4ADV7 1423 aa29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 YBX3P16989 372 aaKnown RBP eCLIP29.13■■■□□ 2.256e-8■□□□□ 8.4
CCDC28B-203ENST00000461819 TRIM28Q13263 835 aaKnown RBP29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 MRPL50Q8N5N7 158 aaKnown RBP29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 BCS1LQ9Y276 419 aa29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 SH3TC1Q8TE82 1336 aa29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 LAMB2P55268 1798 aa29.13■■■□□ 2.25
CCDC28B-203ENST00000461819 DDX60Q8IY21 1712 aaKnown RBP29.12■■■□□ 2.25
CCDC28B-203ENST00000461819 DNAAF4Q8WXU2 420 aa29.12■■■□□ 2.25
CCDC28B-203ENST00000461819 ZNF622Q969S3 477 aaKnown RBP eCLIP29.11■■■□□ 2.259e-11■■■■□ 21.4
CCDC28B-203ENST00000461819 CWC25Q9NXE8 425 aaPredicted RBP29.11■■■□□ 2.25
CCDC28B-203ENST00000461819 DALRD3Q5D0E6 543 aaKnown RBP29.1■■■□□ 2.25
CCDC28B-203ENST00000461819 CCDC191Q8NCU4 936 aa29.1■■■□□ 2.25
CCDC28B-203ENST00000461819 F6X3S4 739 aa29.08■■■□□ 2.25
CCDC28B-203ENST00000461819 SRGNP10124 158 aa29.08■■■□□ 2.25
CCDC28B-203ENST00000461819 RTL5Q5HYW3 569 aaPredicted RBP29.08■■■□□ 2.25
CCDC28B-203ENST00000461819 MASTLQ96GX5 879 aa29.08■■■□□ 2.25
CCDC28B-203ENST00000461819 GRIN3BO60391 1043 aa29.07■■■□□ 2.24
CCDC28B-203ENST00000461819 IGKV5-2P06315 115 aa29.07■■■□□ 2.24
CCDC28B-203ENST00000461819 PTPRCP08575 1304 aa29.07■■■□□ 2.24
CCDC28B-203ENST00000461819 TTLL6Q8N841 843 aa29.07■■■□□ 2.24
CCDC28B-203ENST00000461819 FAM89AQ96GI7 184 aa29.07■■■□□ 2.24
CCDC28B-203ENST00000461819 KLRG2A4D1S0 409 aaPredicted RBP29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 NPR1P16066 1061 aa29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 CWF19L2Q2TBE0 894 aaKnown RBP29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 STYK1Q6J9G0 422 aa29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 SYNE4Q8N205 404 aa29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 NLRP3Q96P20 1036 aa29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 CHD4Q14839 1912 aa29.06■■■□□ 2.24
CCDC28B-203ENST00000461819 NEURL1BA8MQ27 555 aa29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 HCLS1P14317 486 aaPredicted RBP29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 RARSP54136 660 aaKnown RBP29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 SLC10A5Q5PT55 438 aa29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 ZBTB38Q8NAP3 1195 aaPredicted RBP29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 RPGRQ92834 1020 aaKnown RBP29.05■■■□□ 2.24
CCDC28B-203ENST00000461819 SLX4Q8IY92 1834 aa29.04■■■□□ 2.24
CCDC28B-203ENST00000461819 UTRNP46939 3433 aa29.04■■■□□ 2.24
CCDC28B-203ENST00000461819 SLC4A10Q6U841 1118 aa29.04■■■□□ 2.24
CCDC28B-203ENST00000461819 LINS1Q8NG48 757 aa29.04■■■□□ 2.24
CCDC28B-203ENST00000461819 CNKSR1Q969H4 720 aa29.04■■■□□ 2.24
CCDC28B-203ENST00000461819 CRY2Q49AN0 593 aa29.03■■■□□ 2.24
CCDC28B-203ENST00000461819 MYH3P11055 1940 aa29.02■■■□□ 2.24
CCDC28B-203ENST00000461819 PCCAP05165 728 aaPredicted RBP29.02■■■□□ 2.24
CCDC28B-203ENST00000461819 C3orf67Q6ZVT6 689 aa29.02■■■□□ 2.24
CCDC28B-203ENST00000461819 YTHDC1Q96MU7 727 aaKnown RBP29.02■■■□□ 2.24
CCDC28B-203ENST00000461819 IRS4O14654 1257 aaPredicted RBP29.01■■■□□ 2.23
CCDC28B-203ENST00000461819 HSP90B1P14625 803 aaKnown RBP29■■■□□ 2.23
CCDC28B-203ENST00000461819 KIF16BQ96L93 1317 aa28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 GCKRQ14397 625 aa28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 BEND3Q5T5X7 828 aa28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 PRPF40BQ6NWY9 871 aaKnown RBP28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 JARID2Q92833 1246 aaPredicted RBP28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 RBM17Q96I25 401 aaKnown RBP28.99■■■□□ 2.23
CCDC28B-203ENST00000461819 ALDH1B1P30837 517 aa28.98■■■□□ 2.23
CCDC28B-203ENST00000461819 ZNF219Q9P2Y4 722 aaPredicted RBP28.98■■■□□ 2.23
CCDC28B-203ENST00000461819 NOB1Q9ULX3 412 aaKnown RBP28.98■■■□□ 2.23
CCDC28B-203ENST00000461819 BRPF1P55201 1214 aaPredicted RBP28.97■■■□□ 2.23
CCDC28B-203ENST00000461819 SRCIN1Q9C0H9 1055 aa28.97■■■□□ 2.23
CCDC28B-203ENST00000461819 CDHR2Q9BYE9 1310 aa28.96■■■□□ 2.23
CCDC28B-203ENST00000461819 ARHGAP27Q6ZUM4 889 aa28.96■■■□□ 2.23
CCDC28B-203ENST00000461819 UBE3BQ7Z3V4 1068 aa28.96■■■□□ 2.23
CCDC28B-203ENST00000461819 TAF1P21675 1872 aa28.95■■■□□ 2.23
CCDC28B-203ENST00000461819 HOXA10P31260 410 aaPredicted RBP28.95■■■□□ 2.22
CCDC28B-203ENST00000461819 BCAR3O75815 825 aa28.94■■■□□ 2.22
CCDC28B-203ENST00000461819 ALDH1L1O75891 902 aa28.94■■■□□ 2.22
CCDC28B-203ENST00000461819 C21orf2O43822 256 aa28.93■■■□□ 2.22
CCDC28B-203ENST00000461819 PDE8AO60658 829 aa28.93■■■□□ 2.22
CCDC28B-203ENST00000461819 DDX46Q7L014 1031 aaKnown RBP28.93■■■□□ 2.22
CCDC28B-203ENST00000461819 CRAMP1Q96RY5 1269 aa28.93■■■□□ 2.22
CCDC28B-203ENST00000461819 API5Q9BZZ5 524 aaKnown RBP28.93■■■□□ 2.22
CCDC28B-203ENST00000461819 FER1L6Q2WGJ9 1857 aa28.92■■■□□ 2.22
CCDC28B-203ENST00000461819 H7C1W4 665 aa28.92■■■□□ 2.22
CCDC28B-203ENST00000461819 FRAT1Q92837 279 aaPredicted RBP28.92■■■□□ 2.22
CCDC28B-203ENST00000461819 SF3B3Q15393 1217 aaKnown RBP28.91■■■□□ 2.22
CCDC28B-203ENST00000461819 ABCC4O15439 1325 aa28.91■■■□□ 2.22
CCDC28B-203ENST00000461819 IPO8O15397 1037 aaKnown RBP28.9■■■□□ 2.22
CCDC28B-203ENST00000461819 SOGA3Q5TF21 947 aa28.9■■■□□ 2.22
CCDC28B-203ENST00000461819 C9orf78Q9NZ63 289 aaPredicted RBP28.9■■■□□ 2.22
CCDC28B-203ENST00000461819 GRM8O00222 908 aa28.89■■■□□ 2.22
CCDC28B-203ENST00000461819 CCDC88AQ3V6T2 1871 aa28.89■■■□□ 2.21
CCDC28B-203ENST00000461819 PPEF1O14829 653 aaPredicted RBP28.88■■■□□ 2.21
CCDC28B-203ENST00000461819 CTSWP56202 376 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms